PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG469300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 98aa    MW: 10638.6 Da    PI: 8.72
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG469300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-10451347
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                         +WT +  +l+  + + + ++   +W +Iar +g g++ +++k +++k+
  Pavir.1KG469300.1.p  4 SWTDDQNKLFESLLAIYDKDtpdRWQKIARAVGGGKSVEDVKRHYHKL 51
                         7*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.88156IPR017884SANT domain
SMARTSM007172.0E-8154IPR001005SANT/Myb domain
SuperFamilySSF466891.45E-12358IPR009057Homeodomain-like
CDDcd001676.78E-7451No hitNo description
PfamPF002499.4E-8451IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-4452IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MSSSWTDDQN KLFESLLAIY DKDTPDRWQK IARAVGGGKS VEDVKRHYHK LQTDLQDIES  60
TGGCPGSNRS SSGGSSSNGS SCGKANDDKR TRYLKPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-195951191RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.439711e-150leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG469300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822700.12e-33uncharacterized protein LOC112898575
SwissprotQ1A1731e-21RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A3L6RPR01e-41A0A3L6RPR0_PANMI; Protein RADIALIS-like 3
STRINGPavir.Ab02858.1.p7e-66(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.24e-22RAD-like 6