PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG469000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 351aa    MW: 36059.8 Da    PI: 6.8501
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG469000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09162209455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR+ri +++  L+el+P +    sk   Ka +L + ++Y++sLq
  Pavir.1KG469000.2.p 162 SHSLAERVRRERISERMRYLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 209
                          8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.06E-10156213No hitNo description
SuperFamilySSF474591.83E-16156223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-16158220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.491158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6162209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-9164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MARCQGTVES LCQGLLDLDD DKFGAMCSAF GYLQEWPDLA GAMCGAGLGA TPAAVAPGAG  60
AGAGNDDSSC SGSGGGGGGF RKRRPDACLD AKGDGNDMSK RPRGKQQLCG LGEMAAPGKA  120
KQERPKAGAK KKAEAASTAA AAAGQKTDYI HVRARRGQAT DSHSLAERVR RERISERMRY  180
LQELVPGCSK VTGKAGMLDE IINYVQSLQK QVEFLSMKIA ASNPVVSFDI VEDLFGRQLK  240
QACSPAALPA AALPAGQLEP TCLQMNPLQQ VHPSAAGGSN GFGLDMVVNN LYPPAAASCP  300
VSVATPAMAA AGPSIEPCLN VNGAAAAAWD IGSQNLFSGF DAQFHSVESE *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.11180.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG469000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0412380.0BT041238.1 Zea mays full-length cDNA clone ZM_BFc0191L13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813679.10.0transcription factor bHLH49-like
TrEMBLA0A2T7FB250.0A0A2T7FB25_9POAL; Uncharacterized protein
TrEMBLA0A2T7FB270.0A0A2T7FB27_9POAL; Uncharacterized protein
STRINGPavir.Ab02860.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-36cryptochrome-interacting basic-helix-loop-helix 1