PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG461000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 358aa    MW: 38105.8 Da    PI: 8.3696
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG461000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.8e-32176229255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Pavir.1KG461000.2.p 176 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 229
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.51E-15174230IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28174229IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-23176230IPR006447Myb domain, plants
PfamPF002491.8E-7177228IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MELFPAHPDL QLQISPPPAT KPMELGFWKR ALDAASPAAT TAAAAAATAT TAPSLSFTSS  60
SSAPTAAVGF HAAGGAHHHH QVPGSHLGLP FLHHTQPILP EGGGGIRDLA SMRPIRGIPV  120
YSTTQPLPFL QSHPHHHHHH PHCYDAIGVG HAGGPRSPKA ALRLAGASAK RGARAPRMRW  180
TTSLHARFVH AVELLGGHER ATPKSVLELM DVKDLTLAHV KSHLQMYRTI KTTDHKPASA  240
SSYGQATAKM IIDIPDDNLF EVTNTTSGSE SSAQQSNPDG NEHGSSMCAL WSNSSISRGA  300
WFHDKSIDAT PGDIKSFEDV QSERLDDVSD LNSSPFQVAG MFGRSKKPNL DFTLGRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-16177231458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-16177231458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-16177231357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16177231357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16177231357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16177231357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-16177231458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-16177231458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-16177231458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-16177231458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-16177231458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-16177231458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG461000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369111e-107BT036911.1 Zea mays full-length cDNA clone ZM_BFb0147F05 mRNA, complete cds.
GenBankKJ7268291e-107KJ726829.1 Zea mays clone pUT3369 G2-like transcription factor (GLK47) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811930.10.0probable transcription factor KAN2 isoform X2
TrEMBLA0A2T7FAU80.0A0A2T7FAU8_9POAL; Uncharacterized protein
STRINGPavir.Ab02797.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-46G2-like family protein