PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG461000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 359aa MW: 38192.9 Da PI: 8.3696 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.8e-32 | 176 | 229 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Pavir.1KG461000.1.p 176 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 229 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.51E-15 | 174 | 230 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-28 | 174 | 229 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-23 | 176 | 230 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-7 | 177 | 228 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MELFPAHPDL QLQISPPPAT KPMELGFWKR ALDAASPAAT TAAAAAATAT TAPSLSFTSS 60 SSAPTAAVGF HAAGGAHHHH QVPGSHLGLP FLHHTQPILP EGGGGIRDLA SMRPIRGIPV 120 YSTTQPLPFL QSHPHHHHHH PHCYDAIGVG HAGGPRSPKA ALRLAGASAK RGARAPRMRW 180 TTSLHARFVH AVELLGGHER ATPKSVLELM DVKDLTLAHV KSHLQMYRTI KTTDHKPASA 240 SSYGQATAKM IIDIPDDNLF EVTNTTSGSE SSAQQSNPDG NEHGSSMCAL WSNSSISSRG 300 AWFHDKSIDA TPGDIKSFED VQSERLDDVS DLNSSPFQVA GMFGRSKKPN LDFTLGRI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-16 | 177 | 231 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-16 | 177 | 231 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-16 | 177 | 231 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-16 | 177 | 231 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-16 | 177 | 231 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-16 | 177 | 231 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-16 | 177 | 231 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-16 | 177 | 231 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-16 | 177 | 231 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-16 | 177 | 231 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-16 | 177 | 231 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-16 | 177 | 231 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG461000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036911 | 1e-107 | BT036911.1 Zea mays full-length cDNA clone ZM_BFb0147F05 mRNA, complete cds. | |||
GenBank | KJ726829 | 1e-107 | KJ726829.1 Zea mays clone pUT3369 G2-like transcription factor (GLK47) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811921.1 | 0.0 | probable transcription factor KAN2 isoform X1 | ||||
TrEMBL | A0A2S3GSM1 | 0.0 | A0A2S3GSM1_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7FAW0 | 0.0 | A0A2T7FAW0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab02797.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9438 | 34 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17695.1 | 5e-47 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG461000.1.p |