PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG448600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 285aa    MW: 31111 Da    PI: 9.6783
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG448600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.47.9e-143478147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Pavir.1KG448600.1.p 34 RENWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 78
                         789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-172884IPR009057Homeodomain-like
PROSITE profilePS5129415.3722983IPR017930Myb domain
TIGRFAMsTIGR015571.5E-183281IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.4E-73284IPR009057Homeodomain-like
SMARTSM007174.0E-113381IPR001005SANT/Myb domain
PfamPF002491.9E-113478IPR001005SANT/Myb domain
CDDcd001671.09E-83679No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVSASTPPPP SDAAGSGEDA SKKVRKPYTI TKSRENWTEQ EHDKFLEALQ LFDRDWKKIE  60
AFVGSKTVIQ IRSHAQKYFL KVQKNGTSEH VPPPRPKRKA AHPYPQKASK NESTYGLKTD  120
SSSVHRNSGM NATVSSWAVS SIPPAVASSM VKEDLGPGTL GPNNFCSSSN EVPPRTWQPG  180
GANDRINQVP SLRLMPDFAQ VYSFLGSVFD PSTSGHLQKL KEMNPIDVET ALLLMRNLSI  240
NLTSPDFEDQ RKLLSSYSTS DGLELGSSRS SALATSTPFM IKGE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.205270.0leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG448600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794460.0HF679446.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB40 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953449.10.0protein REVEILLE 6 isoform X1
SwissprotQ8H0W35e-97RVE6_ARATH; Protein REVEILLE 6
TrEMBLK3YUN10.0K3YUN1_SETIT; Uncharacterized protein
STRINGPavir.Ab02700.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.13e-82MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]