PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG446500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 24481.1 Da PI: 5.1125 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.7e-18 | 62 | 112 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr++ grWv+e+r+p g ++r++lg+f tae+Aa+a++ a+++l+g Pavir.1KG446500.1.p 62 PVYKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 112 68*****887.9******9996..33.5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.9E-14 | 62 | 112 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-30 | 63 | 122 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.089 | 63 | 120 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-28 | 63 | 126 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-21 | 63 | 121 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.8E-8 | 64 | 75 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.53E-21 | 64 | 122 | No hit | No description |
PRINTS | PR00367 | 2.8E-8 | 86 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MDAGAFASSD YYSSSGTPSP VGGGGGADGD GDGSSPSSYM TVSSAPPKRR AGRTKFKETR 60 HPVYKGVRRR NPGRWVCEVR EPHGKQRIWL GTFETAEMAA RAHDVAALAL RGRAACLNFA 120 DSPRLLRVPP MGAGHDEIRR AAAVAAEQFR PAPGPGNAAA EEVAAAPPEA LPSAPQNFDD 180 PYCIVDDRLD FGMQGYLDMA QGMLIDPPPM AGSSASGGDD DDDNGEVKLW SY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 61 | 119 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG446500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968562 | 0.0 | EU968562.1 Zea mays clone 322305 dehydration-responsive element-binding protein 1A mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953437.2 | 1e-126 | dehydration-responsive element-binding protein 1G | ||||
Swissprot | A2XWL6 | 9e-99 | DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q8H273 | 9e-99 | DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | K3YVG6 | 1e-124 | K3YVG6_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ab02685.1.p | 1e-167 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 4e-34 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG446500.1.p |
Publications ? help Back to Top | |||
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