PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG441000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 358aa MW: 37851.8 Da PI: 5.9544 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.1 | 7.4e-14 | 97 | 148 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A+e++k+L+ Pavir.1KG441000.1.p 97 QRMMHIAVERNRRRQMNEYLAVLRSLMPEP---YVQRGDQASIVGGAIEFVKELE 148 79****************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-17 | 95 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.66E-14 | 95 | 152 | No hit | No description |
PROSITE profile | PS50888 | 15.154 | 96 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-11 | 97 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-13 | 98 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-11 | 102 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MSALVDALCA PPGDAAALIY DTFNAASFLF DGPAAAAALY DGAGIVECPP PPPAQQQQAA 60 EAAGETTQAA TSSAPARVRK RRRWARSCKS REETETQRMM HIAVERNRRR QMNEYLAVLR 120 SLMPEPYVQR GDQASIVGGA IEFVKELEQQ LQCLEAQKRT LLVHQHKAAK PDATPMHHST 180 TTTSSTKAAA GTTACVEPAA AATTTSNCSS SVTEDAADHA PPPPFAQFFS YPQYVWCHSP 240 RDPASSSAAE DGGGRPGVAD IEVTLVETHA SLRVMMPRRP GQLLGLVAGL QALRLGVLHL 300 SVTALESLVL YSISVKVEEG CGLATVEDIA AAAHHVLCLI DAAEPAEQQV LAASDPR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 82 | RKRRR |
2 | 97 | 108 | RMMHIAVERNRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.15890 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG441000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038655 | 1e-117 | BT038655.1 Zea mays full-length cDNA clone ZM_BFb0304G04 mRNA, complete cds. | |||
GenBank | BT066889 | 1e-117 | BT066889.1 Zea mays full-length cDNA clone ZM_BFb0091G16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800848.1 | 0.0 | transcription factor bHLH94-like | ||||
TrEMBL | A0A2T7FAP7 | 0.0 | A0A2T7FAP7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab02502.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3712 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46690.1 | 2e-24 | beta HLH protein 71 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG441000.1.p |