PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG439400.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 318aa    MW: 33858.5 Da    PI: 7.7349
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG439400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000422763091654
                          HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          i +++  L++++ +      +K + a++L ++++YIk L
  Pavir.1KG439400.3.p 276 IGEKITALQQIVSPF-----GKTDTASVLFETIKYIKFL 309
                          667889999999987.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.074260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-7275315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-7275315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-4275314No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
GSAFATDASS PPDLRLPASA EHGHGHAWSQ HGEQSNSTCY RENFLDLLAS KNVTQEMFED  60
VPSGHYAAQA LSGRLGAGSD VAPIKYEATA GGSPLFFGST APGMHQEMNM AACYPYSDHH  120
QMKEGTNRQQ EQLAAPAMAS FLQQLNSNAS TVGMHSGLDY SGIALDKICQ EGRAMEASSF  180
GMRSLPDLSS FSGYRSNAES TSSAQPHLKR SSNLSDSSKQ EQDIVSARSS GGGGGGGAAS  240
DRKKRPSEER TSTVKKSKQE GSKPSPPKQQ VPKVKIGEKI TALQQIVSPF GKTDTASVLF  300
ETIKYIKFLH EQVQVIK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.102120.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG439400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827067.10.0uncharacterized protein LOC112902284
TrEMBLA0A2T8KXA80.0A0A2T8KXA8_9POAL; Uncharacterized protein
TrEMBLA0A3L6QF160.0A0A3L6QF16_PANMI; Uncharacterized protein
STRINGPavir.Aa00896.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-15bHLH family protein