PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG439400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 391aa MW: 42120.6 Da PI: 7.1329 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.5 | 0.00056 | 276 | 309 | 16 | 54 |
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 i +++ L++++ + +K + a++L ++++YIk L Pavir.1KG439400.1.p 276 IGEKITALQQIVSPF-----GKTDTASVLFETIKYIKFL 309 667889999999987.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.074 | 260 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-9 | 275 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.14E-4 | 275 | 314 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-7 | 275 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
GSAFATDASS PPDLRLPASA EHGHGHAWSQ HGEQSNSTCY RENFLDLLAS KNVTQEMFED 60 VPSGHYAAQA LSGRLGAGSD VAPIKYEATA GGSPLFFGST APGMHQEMNM AACYPYSDHH 120 QMKEGTNRQQ EQLAAPAMAS FLQQLNSNAS TVGMHSGLDY SGIALDKICQ EGRAMEASSF 180 GMRSLPDLSS FSGYRSNAES TSSAQPHLKR SSNLSDSSKQ EQDIVSARSS GGGGGGGAAS 240 DRKKRPSEER TSTVKKSKQE GSKPSPPKQQ VPKVKIGEKI TALQQIVSPF GKTDTASVLF 300 ETIKYIKFLH EQVQLLSEPY TNSSRNKGNL PWVVEHAETC KGDQQQGQAE QGLRDRGLCL 360 VPVSWTPEVY RDGGTAMDYW TPAYRGCLYR * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.10212 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG439400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827067.1 | 0.0 | uncharacterized protein LOC112902284 | ||||
TrEMBL | A0A3L6QF16 | 0.0 | A0A3L6QF16_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Aa00896.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12698 | 9 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31050.1 | 1e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG439400.1.p |