PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG425200.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 274aa MW: 27539.6 Da PI: 8.6933

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG425200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.5	2.7e-32	76	129	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Pavir.1KG425200.2.p 76 PRMRWTTALHARFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 129 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-29	73	130	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-16	73	130	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.6E-24	76	129	IPR006447	Myb domain, plants
Pfam	PF00249	3.5E-8	77	128	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MAPPYAEGSG EVGFFANPSP GAEPPGLSLG LGTPALGGDA AGRRDHLEPQ GCAFKRAATS 60 RASLPAGGSK RSSRAPRMRW TTALHARFVH AVELLGGHER ATPKSVLELM NVKDLTLAHV 120 KSHLQMYRTV KSSDRSLHIA TGEALPLQRT ATGMEAAAAA AGGGGGGAAA GGGVVVVPVV 180 AAACDDMVGI CSSPSAGSAP PAAATTSAAH FLCAPPATAP LAAAPSPPPL IPPRSVSACH 240 AFMYLSAIVT AVPGFYSRFC SDQELIGRLC YLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	77	131	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	77	131	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	77	131	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	77	131	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG425200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065124	1e-133	BT065124.1 Zea mays full-length cDNA clone ZM_BFb0205B22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466395.1	1e-103	probable transcription factor GLK2
TrEMBL	A0A3L6SBG0	1e-106	A0A3L6SBG0_PANMI; Putative transcription factor RL9
STRING	Pavir.J38315.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	1e-38	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pavir.1KG425200.2.p