PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.1KG425200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 312aa MW: 31365.9 Da PI: 8.7619 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.2 | 3.4e-32 | 114 | 167 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Pavir.1KG425200.1.p 114 PRMRWTTALHARFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 167 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 24 | No hit | No description |
SuperFamily | SSF46689 | 5.38E-16 | 111 | 168 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-29 | 111 | 168 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.4E-24 | 114 | 167 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.4E-8 | 115 | 166 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 312 aa Download sequence Send to blast |
MLQRNLPNLS LRISPPAASS AAACDAPALA KTPSPEPSMA PPYAEGSGEV GFFANPSPGA 60 EPPGLSLGLG TPALGGDAAG RRDHLEPQGC AFKRAATSRA SLPAGGSKRS SRAPRMRWTT 120 ALHARFVHAV ELLGGHERAT PKSVLELMNV KDLTLAHVKS HLQMYRTVKS SDRSLHIATG 180 EALPLQRTAT GMEAAAAAAG GGGGGAAAGG GVVVVPVVAA ACDDMVGICS SPSAGSAPPA 240 AATTSAAHFL CAPPATAPLA AAPSPPPLIP PRSVSACHAF MYLSAIVTAV PGFYSRFCSD 300 QELIGRLCYL V* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-17 | 115 | 169 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-17 | 115 | 169 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-17 | 115 | 169 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-17 | 115 | 169 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.1KG425200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT065124 | 1e-133 | BT065124.1 Zea mays full-length cDNA clone ZM_BFb0205B22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466395.1 | 1e-116 | probable transcription factor GLK2 | ||||
TrEMBL | A0A3L6SBG0 | 1e-118 | A0A3L6SBG0_PANMI; Putative transcription factor RL9 | ||||
STRING | Pavir.J38315.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6554 | 37 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42630.2 | 3e-38 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.1KG425200.1.p |