PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG418500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 327aa    MW: 34286.3 Da    PI: 6.251
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG418500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20145196256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          +y+GVr+++ +g+++AeIrdp+++g   r++lg+++ta eAa+a+++a+ +++g+
  Pavir.1KG418500.1.p 145 KYRGVRQRP-WGKFAAEIRDPKKRG--SRVWLGTYDTAIEAARAYDRAAFRMRGA 196
                          8********.***********8876..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-32144204IPR001471AP2/ERF domain
PfamPF008471.5E-14145195IPR001471AP2/ERF domain
CDDcd000182.35E-31145204No hitNo description
SuperFamilySSF541712.22E-22145204IPR016177DNA-binding domain
SMARTSM003808.5E-38145209IPR001471AP2/ERF domain
PROSITE profilePS5103224.25145203IPR001471AP2/ERF domain
PRINTSPR003672.0E-13146157IPR001471AP2/ERF domain
PRINTSPR003672.0E-13185205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDFSGEIDDF NLQFIHDQLL GGEACLPVVN VPGAAAYSAP PSVHPAAQAA FQHPAAFVPP  60
PPQQQQQAAA YVDLTNEYAD AAAGAAFRAE PVMIRFGGEP SPVSDPDRRP LLTISLPPTS  120
HAWGPAAGAP LAAAAAALDA NDFRKYRGVR QRPWGKFAAE IRDPKKRGSR VWLGTYDTAI  180
EAARAYDRAA FRMRGAKAIL NFPNEVGSRG ADFLAPPPPP QTSSQNKRKL AHDAAAEAEL  240
AAAKSVKAEA FGSPASSLTS SQSPATTTAS TVTATSSSSS EAGAAEMFLS FPMTPSTSSW  300
TWEQMFGSLS PLSPHPQLGF PEVTVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-28144208468ATERF1
3gcc_A7e-28144208468ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG418500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0840561e-172BT084056.1 Zea mays full-length cDNA clone ZM_BFb0069B11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828794.11e-164ethylene-responsive transcription factor ERF105-like
TrEMBLA0A3L6PMC11e-165A0A3L6PMC1_PANMI; Putative AP2/EREBP transcription factor superfamily protein
STRINGPavir.Ab02473.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-23ethylene responsive element binding factor 5