PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG414100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 245aa MW: 26579.5 Da PI: 5.4048 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57 | 3.4e-18 | 53 | 106 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le+ F+ ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ Pavir.1KG414100.1.p 53 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 106 458**************8899********************************9 PP | |||||||
2 | HD-ZIP_I/II | 123.1 | 1.3e-39 | 51 | 144 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL+++ydal+++ ++L++e+ +L++ Pavir.1KG414100.1.p 51 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRAQYDALHSRVDSLRQEKLALAA 140 69*****************9999******************************************************************9 PP HD-ZIP_I/II 90 elke 93 +++e Pavir.1KG414100.1.p 141 QVDE 144 9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.02E-17 | 38 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.216 | 47 | 108 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-17 | 50 | 112 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-19 | 53 | 115 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.4E-15 | 53 | 106 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.17E-16 | 56 | 109 | No hit | No description |
PRINTS | PR00031 | 5.9E-7 | 79 | 88 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 83 | 106 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.9E-7 | 88 | 104 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.3E-16 | 108 | 149 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDPRECQFVV VPPPRPRHGQ YEEGPFAHHQ MVVAGDPDPG GAGRGGGGGG ERKRRFTEEQ 60 VRSLETTFHA RRAKLEPREK AELARELGLQ PRQVAIWFQN KRARWRSKQL EHDYAALRAQ 120 YDALHSRVDS LRQEKLALAA QVDELKGRLS GRQDQPSGSS CEVSGGAEAA DDGRMNSASC 180 VAEDDGAVTP AVAASEESAA AAAAAAEYCC YDHAAYGGGL LPEPFCTTPE LWDTWPLLEW 240 NAVA* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG414100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063685 | 1e-131 | AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence. | |||
GenBank | AK287604 | 1e-131 | AK287604.1 Oryza sativa Japonica Group cDNA, clone: J065054D22, full insert sequence. | |||
GenBank | EU847515 | 1e-131 | EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816119.1 | 1e-121 | homeobox-leucine zipper protein HOX24-like | ||||
Swissprot | A2X7U1 | 4e-82 | HOX24_ORYSI; Homeobox-leucine zipper protein HOX24 | ||||
TrEMBL | A0A3L6RVE9 | 1e-121 | A0A3L6RVE9_PANMI; Homeobox-leucine zipper protein HOX24-like | ||||
STRING | Pavir.Ab02438.1.p | 1e-178 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-33 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG414100.1.p |