PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG410700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 299aa MW: 32039.2 Da PI: 8.8138 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.4e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llvd+++ G g+W++ ++ g++R++k+c++rw +yl Pavir.1KG410700.1.p 15 KGPWTPEEDKLLVDYIQANGHGSWRLLPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.1 | 5.6e-15 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++ E++ +v++++ G++ W+ Ia+ ++ gRt++++k++w+++l Pavir.1KG410700.1.p 68 RGPFSPAEQKSIVQLHAIVGNK-WSMIAAQLP-GRTDNEIKNYWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-23 | 9 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.019 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.03E-30 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.11E-10 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.025 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-26 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-13 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.15E-10 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MGRAPCCDRT KGLKKGPWTP EEDKLLVDYI QANGHGSWRL LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGP FSPAEQKSIV QLHAIVGNKW SMIAAQLPGR TDNEIKNYWN THLKKQLRRM 120 GLAEPAPGPA AGCPAARHMA QWETARLEAE ARLSLLAAAS SSSGATSTAA ATTTTSASSS 180 STCAAGAEKA AASKPADIFL RLWSSDIGDS FRRRTAAPPA PVKRKDDAAV IKQEARAQPG 240 PGDDDSSAAS SEEALEVYQM FLDFAGEELG LFHGRHGGFS LFPPHDDVLA EASLDTAF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG410700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038693 | 0.0 | BT038693.1 Zea mays full-length cDNA clone ZM_BFb0309J21 mRNA, complete cds. | |||
GenBank | KJ727528 | 0.0 | KJ727528.1 Zea mays clone pUT5388 MYB transcription factor (MYB103) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791223.1 | 1e-163 | transcription factor MYB41-like | ||||
Swissprot | Q9M2D9 | 3e-84 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | A0A2S3GRY6 | 1e-162 | A0A2S3GRY6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab02419.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5409 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 2e-68 | myb domain protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG410700.1.p |