PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.1KG402200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 28799.3 Da PI: 6.943 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +lv ++++G +W++ ++ g+ R++k+c++rw +yl Pavir.1KG402200.1.p 14 RGPWTPEEDRILVAHIERHGHSNWRALPKQAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l Pavir.1KG402200.1.p 67 RGNFTREEEDAIIHLHHMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.543 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.91E-30 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.64E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.616 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.33E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MGRAPCCERM GLKRGPWTPE EDRILVAHIE RHGHSNWRAL PKQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TREEEDAIIH LHHMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLEPKP 120 ASQQQAAAPK RKPTKKKQQQ QPDAEVVVLD GPTSITAPVS PEQSSLYTST TTSSADCSAA 180 SSLDNNADSF TSEEDYRIED SFWSETLAMA VDSSGDYSSG MEREDAPAAP AANDDMDFWL 240 KLFMQASDMQ NNLLQI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 12 | 117 | 5 | 109 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.8761 | 1e-109 | callus| root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.1KG402200.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798785.1 | 1e-164 | transcription factor MYB30-like | ||||
Swissprot | Q6K1S6 | 1e-110 | MYB30_ORYSJ; Transcription factor MYB30 | ||||
TrEMBL | A0A2S3GRM6 | 1e-163 | A0A2S3GRM6_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7F975 | 1e-163 | A0A2T7F975_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab02340.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23250.1 | 1e-78 | myb domain protein 15 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.1KG402200.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|