PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG397100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 221aa MW: 22535.4 Da PI: 10.3842

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG397100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.5	1.2e-34	56	173	9	89
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg....... 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ +++ssss+ ++ + Pavir.1KG397100.1.p 56 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssAPSTSSSSHYHQ--Qtvlgkrp 143 89*******************************************************99999444322222222222222..12344555 PP TCP 89 .............................k 89 Pavir.1KG397100.1.p 144 reegdagaaaaasafwaalpapprtteawG 173 555555655554444444444444443330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.009	55	109	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	8.9E-31	55	142	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MATTRDVSTA AAMFHVYQPL QAPSTAAPAA AAGEGGGGGM AVVPAKPVKK EGGGGKDRHS 60 KVNGRGRRVR MPIVCAARVF QLTRELGLKS DGQTIEWLLR QAEPSILAAT GSGTTPAVFV 120 SSSAPSTSSS SHYHQQTVLG KRPREEGDAG AAAAASAFWA ALPAPPRTTE AWGFSPLEAQ 180 AAAAAAAAAA YVPMAQAHHH HLNLLAALSG AARRAEEETR *

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00655	PBM	Transfer from LOC_Os02g42380	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG397100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727699	1e-170	KJ727699.1 Zea mays clone pUT5638 TCP transcription factor (TCP16) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953208.1	1e-106	transcription factor TCP21-like
Swissprot	Q9FMX2	9e-44	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A368PNU6	1e-105	A0A368PNU6_SETIT; Uncharacterized protein
STRING	Pavir.J15424.1.p	1e-109	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-33	TCP family protein

Link Out ? help Back to Top
Phytozome	Pavir.1KG397100.1.p