PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG387700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 692aa    MW: 73755.1 Da    PI: 7.033
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG387700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.6e-23120221199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g  W++++iyr++++r++lt+GW+ Fv++++L +gD++vF 
  Pavir.1KG387700.1.p 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaADPPVQ--TVIAKDVHGAAWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL 207
                          89*****************************96555555..8************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++ l+v+++r+
  Pavir.1KG387700.1.p 208 --RGDGGDLHVGIRRA 221
                          ..3488999*****97 PP
2Auxin_resp112.15.3e-37274357183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+ as  + FevvY+Prast+eF+v+++ v++a++v++s+GmRfkmafetedss++++ +Gtv+gv+ +dp++Wp+S+Wr+L+
  Pavir.1KG387700.1.p 274 AARLASAWQSFEVVYYPRASTPEFCVRAAAVRAAMRVQWSPGMRFKMAFETEDSSRISWfMGTVAGVQVADPISWPQSPWRLLQ 357
                          67889999**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-37111223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-29115222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-21119220No hitNo description
PfamPF023621.6E-21120221IPR003340B3 DNA binding domain
PROSITE profilePS5086312.703120222IPR003340B3 DNA binding domain
SMARTSM010191.9E-20120222IPR003340B3 DNA binding domain
PfamPF065079.5E-32274357IPR010525Auxin response factor
PROSITE profilePS5174516.979605685IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MITFADLTEP AAAAGVDRQL WLACAGGMCT VPPVGASVYY FPQGHAEHAL GLAGAADLSA  60
ARVPALVPCR VAAVRYMADP DTDEVFARIR LAPLRAGEAD AGPDDDDAAA DDEHEKPASF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YAADPPVQTV IAKDVHGAAW KFRHIYRGTP  180
RRHLLTTGWS TFVNQKKLVA GDSIVFLRGD GGDLHVGIRR AKRGFCGAGG GGGGGEGEEP  240
GWDHYAGMMR GNVSPCAAAK AARGKARPED VAEAARLASA WQSFEVVYYP RASTPEFCVR  300
AAAVRAAMRV QWSPGMRFKM AFETEDSSRI SWFMGTVAGV QVADPISWPQ SPWRLLQVNW  360
DEPELLQNVK RVSPWLVELV SSIPAIHLPS FSPPPKRPRI RAYPEFPFEG QLLNPAFPPN  420
PLPHGGHHYL HTHPSFPFPD GSAPAAIQGA RHAQFVPPLS DLHFTHLQSS LLYPGGLRRP  480
DHIGPTTPLP ARISTDLTIG AAPARDDVSC ALSIGASNNK KPGAAKPAGL VLFGRTILTE  540
QQMSLSGSGG ATSPAATGNS WNADKCPNAS EGSGSGVTQN SPTKNYSSPW FRDGSQAPEV  600
VGLEPGQCKV FVESDTVGRN LDLSALGSFD ELYGRLSEMF RIESAELRSR VLYRGAAGDV  660
KHAGDEPFSV FVKSARRLTI LTDAGSDNLG S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-781637851388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.42650.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG387700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9553850.0EU955385.1 Zea mays clone 1530377 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793426.10.0auxin response factor 8-like
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A3L6QGQ50.0A0A3L6QGQ5_PANMI; Auxin response factor
STRINGSi016509m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16