PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG385500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 284aa    MW: 31912.4 Da    PI: 5.6884
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG385500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.15.6e-201663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT++Ed+llv++v+q+G g+W+++a+  g++R++k+c++rw +yl
  Pavir.1KG385500.1.p 16 KGPWTAQEDKLLVEYVRQHGEGRWNSVAKLTGLKRSGKSCRLRWVNYL 63
                         79********************************************97 PP
2Myb_DNA-binding513.4e-1669113147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+ T++E+  ++++++++G++ W+tIar ++ gRt++++k++w+++
  Pavir.1KG385500.1.p  69 RGKITPQEESVILELHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 113
                          8999******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6521163IPR017930Myb domain
SuperFamilySSF466891.72E-3014110IPR009057Homeodomain-like
SMARTSM007174.0E-171565IPR001005SANT/Myb domain
PfamPF002498.9E-191663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-241770IPR009057Homeodomain-like
CDDcd001673.16E-121863No hitNo description
PROSITE profilePS5129424.93364118IPR017930Myb domain
SMARTSM007174.5E-1568116IPR001005SANT/Myb domain
PfamPF002496.1E-1469113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2471116IPR009057Homeodomain-like
CDDcd001671.72E-973114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEGQFGWGRE EGGWRKGPWT AQEDKLLVEY VRQHGEGRWN SVAKLTGLKR SGKSCRLRWV  60
NYLRPDLKRG KITPQEESVI LELHALWGNR WSTIARSLPG RTDNEIKNYW RTHFKKGKPS  120
KNIERARARF LKQRREMQSQ LLLQQQQQGQ EQQQRPAGDD HDDDGTVIRE ASSSSSPAVS  180
LARQHEEDLQ TMLQQDMDDL LFQFCCPMAS CASSSSCLLP GATAASEEGS SGDHPQLDSG  240
ATWGWGSLWN LDDVVDDVDG GGACGGWDDT SFPWLQDQGL AFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26161167106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG385500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0992831e-147AK099283.1 Oryza sativa Japonica Group cDNA clone:J023132O17, full insert sequence.
GenBankAK1118071e-147AK111807.1 Oryza sativa Japonica Group cDNA clone:J013104N22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824016.11e-152transcription factor MYB2-like
TrEMBLA0A2T7F9391e-152A0A2T7F939_9POAL; Uncharacterized protein
STRINGPavir.J23620.1.p1e-173(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.13e-65myb domain protein 79