PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG361200.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 360aa    MW: 38905.6 Da    PI: 8.1168
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG361200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.73e-16195248256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq   Le+ F+ +++++  ++ +LAk+l+L  rqV vWFqNrRa+ k
  Pavir.1KG361200.2.p 195 RKKLRLSKEQSALLEDSFKGHSTLTP-QKSDLAKQLKLRPRQVEVWFQNRRARTK 248
                          678899******************97.5799**********************98 PP
2HD-ZIP_I/II118.15e-38195283191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlskeq++lLE+sF+ +++L+p +K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+++al++en+rL++ev+eLr +
  Pavir.1KG361200.2.p 195 RKKLRLSKEQSALLEDSFKGHSTLTP-QKSDLAKQLKLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCEALAQENRRLHREVAELR-A 282
                          69**********************99.699*********************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Pavir.1KG361200.2.p 283 L 283
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-15175248IPR009057Homeodomain-like
PROSITE profilePS5007113.864191250IPR001356Homeobox domain
SuperFamilySSF466893.08E-15191259IPR009057Homeodomain-like
SMARTSM003893.7E-13193254IPR001356Homeobox domain
PfamPF000461.7E-13195248IPR001356Homeobox domain
CDDcd000866.10E-14195251No hitNo description
PROSITE patternPS000270225248IPR017970Homeobox, conserved site
SMARTSM003401.1E-22250293IPR003106Leucine zipper, homeobox-associated
PfamPF021831.5E-11250283IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MRSFLRPTKT HSSSPARPPR RPGRWCAAPA ADQSNPASAP PHRPPASPST PPSGPSDPAA  60
PLVLLAAGKE DHELVLELGV GTAKRTEQDN QKTPKQPGED AQDQEDDGEA CFRSESPVEL  120
SLGCPLLPAS AETGSANSEE CRRGFEVNTV VVDGESAQGR SLSTSSLPRE VSVRQAADQE  180
AAEDEENSGV GRGVRKKLRL SKEQSALLED SFKGHSTLTP QKSDLAKQLK LRPRQVEVWF  240
QNRRARTKLK QTEVDCEYLK RCCEALAQEN RRLHREVAEL RALRTAPYPF YGHLPAAGFS  300
TACVCPSCDD KVIAAHHSSI TATSLAVPPP SPVSTLFARP HFGPFTIHPV LRRQPSATS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242250RRARTKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG361200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952725.11e-175homeobox-leucine zipper protein HOX7
SwissprotA2X6742e-90HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
TrEMBLA0A2T7F7Y81e-177A0A2T7F7Y8_9POAL; Uncharacterized protein
TrEMBLA0A3L6QJX51e-179A0A3L6QJX5_PANMI; Homeobox-leucine zipper protein HOX7-like
STRINGPavir.Ab02093.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-53homeobox from Arabidopsis thaliana