PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG361200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 361aa    MW: 39033.8 Da    PI: 8.2776
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG361200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-18195249256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq   Le+ F+ +++++ +++ +LAk+l+L  rqV vWFqNrRa+ k
  Pavir.1KG361200.1.p 195 RKKLRLSKEQSALLEDSFKGHSTLTPKQKSDLAKQLKLRPRQVEVWFQNRRARTK 249
                          678899***********************************************98 PP
2HD-ZIP_I/II125.23e-40195284191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlskeq++lLE+sF+ +++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+++al++en+rL++ev+eLr +
  Pavir.1KG361200.1.p 195 RKKLRLSKEQSALLEDSFKGHSTLTPKQKSDLAKQLKLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCEALAQENRRLHREVAELR-A 283
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Pavir.1KG361200.1.p 284 L 284
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-17175249IPR009057Homeodomain-like
SuperFamilySSF466898.13E-18191260IPR009057Homeodomain-like
PROSITE profilePS5007117.119191251IPR001356Homeobox domain
SMARTSM003892.4E-15193255IPR001356Homeobox domain
CDDcd000861.37E-15195252No hitNo description
PfamPF000467.5E-16195249IPR001356Homeobox domain
PROSITE patternPS000270226249IPR017970Homeobox, conserved site
PfamPF021831.5E-11251284IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-22251294IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MRSFLRPTKT HSSSPARPPR RPGRWCAAPA ADQSNPASAP PHRPPASPST PPSGPSDPAA  60
PLVLLAAGKE DHELVLELGV GTAKRTEQDN QKTPKQPGED AQDQEDDGEA CFRSESPVEL  120
SLGCPLLPAS AETGSANSEE CRRGFEVNTV VVDGESAQGR SLSTSSLPRE VSVRQAADQE  180
AAEDEENSGV GRGVRKKLRL SKEQSALLED SFKGHSTLTP KQKSDLAKQL KLRPRQVEVW  240
FQNRRARTKL KQTEVDCEYL KRCCEALAQE NRRLHREVAE LRALRTAPYP FYGHLPAAGF  300
STACVCPSCD DKVIAAHHSS ITATSLAVPP PSPVSTLFAR PHFGPFTIHP VLRRQPSATS  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243251RRARTKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG361200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952725.11e-178homeobox-leucine zipper protein HOX7
SwissprotA2X6746e-93HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
TrEMBLA0A2T7F7Y81e-180A0A2T7F7Y8_9POAL; Uncharacterized protein
TrEMBLA0A3L6QJX50.0A0A3L6QJX5_PANMI; Homeobox-leucine zipper protein HOX7-like
STRINGPavir.Ab02093.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128943035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-55homeobox from Arabidopsis thaliana