PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG360800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 302aa    MW: 31490.4 Da    PI: 9.1479
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG360800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.18e-174594255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr+++ +gr++AeIrdp     +  r +lg++ taeeAa a++ a++ l+g
  Pavir.1KG360800.1.p 45 RYRGVRRRP-WGRFAAEIRDPM----SkERRWLGTYNTAEEAACAYDIAARILRG 94
                         69*******.**********84....35999********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-2544104No hitNo description
Gene3DG3DSA:3.30.730.103.1E-2945103IPR001471AP2/ERF domain
SMARTSM003802.5E-3345108IPR001471AP2/ERF domain
PfamPF008472.8E-94594IPR001471AP2/ERF domain
PROSITE profilePS5103222.61645102IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2145103IPR016177DNA-binding domain
PRINTSPR003677.7E-94657IPR001471AP2/ERF domain
PRINTSPR003677.7E-96884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEGAHLYAHT NGRHHHRSKR PTPAAPGVMD VDVDGDGDAS PKGARYRGVR RRPWGRFAAE  60
IRDPMSKERR WLGTYNTAEE AACAYDIAAR ILRGNKARTN FPVHATAAAY WAWGAPQAAA  120
GAGPLDPVLA HNLLMGSSHH GCRVLHHAGG HGHPSPARPP PPAPAPAPPL TASASRAVAA  180
PAATSSSPAA ASSPVAPSVD MAIWGRVLRS GPPDAGLLQD ALHGFYPGML PRVDLGDAAV  240
EGIAEQDRRE ALAVASPCAG DDSDEAGLMP QGLLEDVIQY RAFLDAVAAP PAATRRGRRR  300
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1842107268ATERF1
3gcc_A3e-1842107268ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG360800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9548773e-95EU954877.1 Zea mays clone 1489895 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822050.11e-127ethylene-responsive transcription factor FZP-like
TrEMBLA0A3L6RV541e-149A0A3L6RV54_PANMI; Ethylene-responsive transcription factor 3-like
STRINGPavir.J21660.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.13e-11ERF family protein