PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG343100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 369aa    MW: 38991.8 Da    PI: 7.085
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG343100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.13.9e-07154175223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           C++Cgk F+r  nL+ H+r H
  Pavir.1KG343100.1.p 154 FCEICGKGFRRDANLRMHMRAH 175
                          6*******************99 PP
2zf-C2H211.20.0011242266123
                          EEETTTT..EEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                          y C+ C+  k+F    +L++H+r +
  Pavir.1KG343100.1.p 242 YACERCDgkKRFAVLADLRSHLRHC 266
                          89********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.99E-6150175No hitNo description
Gene3DG3DSA:3.30.160.606.2E-6153175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.676153175IPR007087Zinc finger, C2H2
SMARTSM003550.0017153175IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
SMARTSM0035576204237IPR015880Zinc finger, C2H2-like
SMARTSM0035520242265IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDSTPGNPAA GSRGSAIASR GATAPPQLTM PGGEPSDALV GGGAGGPDGD PRVALLRLAA  60
LGDRMAAVRG RITASISGEA RPLSYADIQS VSLEISSAAQ LVVLNAASLL ASSIPAAAAS  120
AQAQEQPLEA AKGDGGYEVV ELDAAELLAE HVHFCEICGK GFRRDANLRM HMRAHGDRFK  180
TLDALSRPGQ GKPKPPAGGR EVRFSCPFAG CNRNRAHRRF RPLKSAVCAR NHFRRSHCPK  240
LYACERCDGK KRFAVLADLR SHLRHCGEEA QWRCSCGTTF SRKDKLFGHL ALFEGHTPAV  300
TGPKKDVAAG PTEPILDAME EGGIEEGNCD QEEDEEGGYD PEFFKEWMEE LRGGASCSSW  360
PGPAAAGH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.81451e-162callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG343100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794886.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A3L6QFI90.0A0A3L6QFI9_PANMI; Zinc finger protein STAR3-like
STRINGSi017455m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-69C2H2 family protein