PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG338700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARF | ||||||||
Protein Properties | Length: 673aa MW: 74744.9 Da PI: 5.8068 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.9 | 3.9e-23 | 122 | 222 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++ +++aee+ ++++ + +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F Pavir.1KG338700.1.p 122 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmtQNPPWQ--ELVAKDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL 209 99**************************99975555545..8************************************************ PP E-SSSEE..EEEEE- CS B3 84 ldgrsefelvvkvfr 98 + +++el+v+v+r Pavir.1KG338700.1.p 210 --RGDNGELRVGVRR 222 ..3489999***997 PP | |||||||
2 | Auxin_resp | 103 | 3.6e-34 | 248 | 333 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdl...dpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a ++k+svGmRfkm+fe+++s+err+sGt++g+ + +++ W +S WrsLk Pavir.1KG338700.1.p 248 ASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKNHKMSVGMRFKMRFEGDESPERRFSGTIIGLGSMpanSTSPWADSDWRSLK 333 789*************************************************************988753336789********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.88E-43 | 113 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-40 | 118 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.82E-21 | 120 | 222 | No hit | No description |
PROSITE profile | PS50863 | 11.434 | 122 | 224 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-21 | 122 | 224 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-21 | 122 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-32 | 248 | 333 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.0E-13 | 485 | 633 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.719 | 542 | 624 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.4E-12 | 544 | 620 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MANAGAAVGP GGASDALFRE LWHACAGPLV TVPRQGELVY YFPQGHMEQL EASTDQQLDQ 60 HLPLFNLPSK ILCKVVNVEL RAETDSDEVY AQIMLQPEAD QNEPTGPDPE PPEPERCNVH 120 SFCKTLTASD TSTHGGFSVL RRHAEECLPQ LDMTQNPPWQ ELVAKDLHGN EWHFRHIFRG 180 QPRRHLLTTG WSVFVSSKRL VAGDAFIFLR GDNGELRVGV RRLMRQLNNM PSSVISSHSM 240 HLGVLATASH AISTGTLFSV FYKPRTSRSE FVVSVNKYLE AKNHKMSVGM RFKMRFEGDE 300 SPERRFSGTI IGLGSMPANS TSPWADSDWR SLKVQWDEPS AVVRPDRVSP WELEPLDATN 360 TQPPQPPLRN KRARPPASPS IAPELPPAFG FWKSPAEPTH AFSFSGLQRT QELYHSNPNS 420 IFSSSLNVGF NSKNEHSTPT NNHLYWPIRD TRTESYSASI NKLLPERKQE SATAGCRLFG 480 IEISNAVSPV VTVASVGQDQ PPVESVDVES DQLSQPSQAN KTDAPAASSE RSPHETESRQ 540 VRSCTKVIMQ GMAVGRAVDL TRLEGYDDLL HKLEEMFDIQ GELSASLKKW KVIYTDDEDD 600 MMLVGDDPWP EFCSMVKRIY IYSYEEAKSL TPKAKLPVIG DTTKPNPDKL SPESDMPQSD 660 SNNSALVAAD KD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 1 | 358 | 1 | 357 | Auxin response factor 1 |
4ldw_A | 0.0 | 1 | 358 | 1 | 357 | Auxin response factor 1 |
4ldw_B | 0.0 | 1 | 358 | 1 | 357 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5912 | 0.0 | callus| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG338700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087991 | 0.0 | BT087991.1 Zea mays full-length cDNA clone ZM_BFb0342B01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808945.1 | 0.0 | auxin response factor 7-like isoform X1 | ||||
Refseq | XP_025808954.1 | 0.0 | auxin response factor 7-like isoform X1 | ||||
Swissprot | Q6YVY0 | 0.0 | ARFG_ORYSJ; Auxin response factor 7 | ||||
TrEMBL | A0A2S3GQD7 | 0.0 | A0A2S3GQD7_9POAL; Auxin response factor | ||||
STRING | Pavir.Aa01676.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1082 | 36 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.4 | 0.0 | auxin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG338700.1.p |
Publications ? help Back to Top | |||
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