PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG332000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 886aa MW: 91798.3 Da PI: 10.3045 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3.1e-09 | 209 | 253 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 ++W++eEd l +v+++G g+W+ I ++ ++Rt+ q+ rw Pavir.1KG332000.1.p 209 KAWSKEEDVDLTAGVQKYGEGNWDYILHKCKfdNTRTPDQLSQRW 253 58******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-11 | 203 | 258 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.246 | 203 | 262 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.02E-12 | 206 | 259 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-6 | 207 | 259 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-6 | 209 | 253 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.33E-16 | 211 | 258 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 886 aa Download sequence Send to blast |
MAAPAPAPGA GAGKGKGKRK RALSEDDVYL LLNRYAPGTI LTALQEVAQH AEGRRIDWRA 60 VVRKSATGIT SAREYQMLWR HFAYNHDLDE TVDAADQPLG DDSDLELEIE PVPNPTNEAL 120 SEASALAKAL ISGSSREQAS GQRVNLDASV QNTPNEKTVR VPSEKQVAQN QRITSVTGPV 180 SSSKQASHLG LSPGSLDPNG PPKKKKKPKA WSKEEDVDLT AGVQKYGEGN WDYILHKCKF 240 DNTRTPDQLS QRWALICKRP GGSTKPASTK HATVASSEER KDALKAFSIA VGPIRRSSML 300 RPGAQQLGIQ HKSTVFAPKI PEVRSAAAPA PALPVPAPAP APAPAPAVPV PVPMPLPVKV 360 PVKSQLPQGQ QAPVQRAPPK SANTSNKTRK KQSPQPSPII GPSSIQAAAI AAGGRIAPAL 420 TAANFLKVAQ SAHIRSQVTG SSKPSSSTKA PSVVVEPGTQ LGSTQHLEPL NTSGPKSGPS 480 VLTTHATEQV HGASEVAIVN PAGPSARAHP LETNKALSTT LVPVSCDSEE KEDDSTFCVI 540 TIDDLFPEDA MQLETVDLEA KPEIADQKAK QPETVDAKAK QSEAADPKAN QPETADPKAK 600 QPETADPKAK QPETVDPKAK QLDTLNPKVD MVDPKDKDML EFDQYVASQG GAVNTDHLDK 660 SNTGRSSSQP QGLVGSQKNQ VKLVPNVGKG NPVSAGVPAT VKRTKTSVPH LVNPVPAGSP 720 RGIVGTVNAN APNKTLVRKA TALVPAGVQA PLLKKHATNG KGNQVMQPST GSGVPASSQA 780 RVAVNGASKV NLPSSSGQAS SVVNIGNRAN PPYSGQASAV VNIGSKANSP SSGQASVVVN 840 GANRAANPPS SSKASVALSS PSSGKASAAL SGAANKANPP AAPKQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 201 | 207 | PKKKKKP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5372 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG332000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812020.1 | 0.0 | nascent polypeptide-associated complex subunit alpha, muscle-specific form-like | ||||
TrEMBL | A0A3L6QE20 | 0.0 | A0A3L6QE20_PANMI; Nascent polypeptide-associated complex subunit alpha, muscle-specific form-like | ||||
STRING | Pavir.Aa01714.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4684 | 37 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 1e-34 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG332000.1.p |