PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG331500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 732aa MW: 82494.1 Da PI: 6.7746 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.2 | 4.9e-22 | 94 | 180 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFs+rk k+++ + +++i ++++ Cskeg +e ek + +++ + ++trt+C+a+++ + +++g+w+v++l+++HnH+la Pavir.1KG331500.1.p 94 LYCNYGHRMGFSIRKGKQTYFTGTKRIRTKDYFCSKEGLKEGEKLT--DANFNDPHTRTNCRAMVRFRVNDHGEWKVIRLVSDHNHNLA 180 7****************************************99988..9999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.4E-19 | 94 | 180 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.0E-25 | 304 | 398 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.903 | 587 | 623 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 7.9E-5 | 595 | 620 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0016 | 598 | 625 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MSQVEPAAAA GAGQTGGEGA VVPPDEGVGG GGDVATAEAQ VAVVVSTSGD ERRVEYGDDA 60 DNEGGEAATV QGSKEGTEEL IRKVVYSEEA AYKLYCNYGH RMGFSIRKGK QTYFTGTKRI 120 RTKDYFCSKE GLKEGEKLTD ANFNDPHTRT NCRAMVRFRV NDHGEWKVIR LVSDHNHNLA 180 RPEERHLLRS ARSLIAGQSS SVEAMVYAGY QVQGGAPQLP AGSTSAANNV ENSKQHLLLG 240 YGAMAKTLAV GTGDLQSLVS YLKSRANEDG MFYWDVQLDQ SGRMTNFFWR DGRSRIDYDC 300 FSDVVVFDST YRLSKQNLIC APFVGVNHHW QTTMYGCALL ADESMSAFVW LFKSFLESMG 360 NRHPQSIFTN LDQVVSKAVE DVFPNTCHRI AHWHIQKNAH SRLGALNVSK VFNKMFTKCI 420 QGCDSETEFE ETWAQMIHEF KLQDNKWLKK FYKLKQKWCS ALNKCTFDGG VEYEPQCDSM 480 SNIFNNVADK LTSLSAIAVA VDKLSEDWRE KELEEDTRCL QKPPACIIKH SDILNHAAKV 540 YTHRIYKLFE TDFLDGCGAT KFKELPCEDN NTHHFEMTMQ GRGSRVCTVR LNMSTMELSC 600 SCSKFETMGL LCSHALKALS IKNICKIPES YILKRWTKDA KKWVFNPKQY ESSYQECMDD 660 DAAYGNYVMR YAYDLVTKSQ GQEELRKALW ETLESGEKEL EKYLGNELLT QTVLLRNENK 720 SFSNKIQDRC P* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG331500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806331.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A3L6RPE7 | 0.0 | A0A3L6RPE7_PANMI; Protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | Pavir.Ab01899.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-82 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG331500.1.p |