PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG325000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 323aa    MW: 33444.9 Da    PI: 9.0677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG325000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-10117165355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +ah   Er RR+r+++ f +L  l+P+     s+K++Ka+ + +++++Ik L+
  Pavir.1KG325000.1.p 117 KAHIVTERERRKRMKDLFTNLHALMPHV----SEKVDKATLVGETIHFIKALE 165
                          6899***********************8....7*****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.595114164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-13116178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.16E-10117166No hitNo description
PfamPF000104.5E-8117165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-13118178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-6120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.589249322IPR002912ACT domain
CDDcd021160.0023250299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAQNGPHDHH QGAAASDERS FTPPTTMTFL GPAETHTGGS RIGSPVGMNA SKGKDVVLPN  60
AVQGGEHGSA GGGEANADKS KGKHPAAREA AATDAAGHGL PKGKGSMAAA DDGGDAKAHI  120
VTERERRKRM KDLFTNLHAL MPHVSEKVDK ATLVGETIHF IKALEQTKAQ LERRKQEQAL  180
ARQAAAEAAV SALLSAPQTA PGMAAMSNGW GPAVPPQQQP LAAAATGPAG FQTWSAPNVA  240
LSVSNEKAII SVCLPRQPRM LTLVMSVLSK HGIDVITVHV AADGPRSLIN IYTRVNVAGG  300
ESPSAEDIYK LAVSEIMVWL TT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG325000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821631.11e-175transcription factor bHLH95-like
TrEMBLA0A3L6RQ131e-176A0A3L6RQ13_PANMI; Transcription factor bHLH95-like
STRINGPavir.Ab01880.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-14bHLH family protein