PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG324900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 332aa    MW: 34498.4 Da    PI: 5.3801
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG324900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.7e-11125172455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er RR+r+++ f++L el+P+     s K++Ka+ + +++++Ik L+
  Pavir.1KG324900.1.p 125 VHIIMERERRRRMKQMFNTLHELMPHV----SNKVDKATLVGETINFIKTLE 172
                          599***********************7....79****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.982121171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-14125191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-9125172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-13125189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-8127177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.514258331IPR002912ACT domain
CDDcd021162.45E-4259315No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAHQDGPHDH QDTGSNERGF VPPTTRTFLG TAAENVDDNN RGSSRIGSPV GMNADEGKGA  60
VPKAIQQGGD DGSASGGKAD SGTSEGKQHL ATGAAAAAGA AGDDSASNKG KSAALSADDD  120
GELKVHIIME RERRRRMKQM FNTLHELMPH VSNKVDKATL VGETINFIKT LEETKAQLEK  180
KVEQALAQQA ATEAAAVGAS SLSVLRTAHG MAALSDGWDP VPPQQPAAPA AAATGPVAGF  240
QTWSTQNVVL SVLNEEAIIN VCAPRQRGLL TMVVSVLSKH GIDVISVQVG ADDAQSFFNI  300
YTRVNGAGGE NPLVEDTYKL AVSEIMVRLS N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG324900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821619.11e-138transcription factor bHLH95-like
TrEMBLA0A2T7F7F51e-144A0A2T7F7F5_9POAL; Uncharacterized protein
STRINGPavir.Ab01881.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-09bHLH family protein