PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG324800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 276aa    MW: 28968.9 Da    PI: 9.1821
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG324800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-1069115454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           h ++Er RR+r+++ f++L el+P+     s K++Ka+ + +++++Ik L
  Pavir.1KG324800.1.p  69 VHIIMERERRRRMKQMFNTLHELMPHV----SNKVDKATLVGETINFIKIL 115
                          599***********************7....79***************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.74165115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1368127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1169126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-869115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-871121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.711202275IPR002912ACT domain
CDDcd021160.00552203251No hitNo description
Gene3DG3DSA:3.30.70.2604.2E-4203250No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MNAGEGKDVV VPNAIQQGGD DGAKADSSTS EGKKHLATGA AAADAAGDGS TSNKGKSALA  60
ADDDGELKVH IIMERERRRR MKQMFNTLHE LMPHVSNKVD KATLVGETIN FIKILEETKA  120
QLEKKKIEQA LSRGRQPPKP PPRGGGGLID AARDGGPVGW RGPVPPQQPA APAAAAATGP  180
VAGFQTWSTQ NVVLSVLNEE AIINVCAQRQ RGLLTMVVSV LSKHGIDVIS VQVGADDAQS  240
FFNIYARVNG ARGKNPSAED ICKLAVSEIM VRLSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG324800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821619.12e-96transcription factor bHLH95-like
TrEMBLA0A2T7F7F51e-101A0A2T7F7F5_9POAL; Uncharacterized protein
STRINGPavir.Aa01764.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-08bHLH family protein