PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG305800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 252aa    MW: 26957.1 Da    PI: 4.5485
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG305800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-192980156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  Pavir.1KG305800.1.p 29 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAIAYDRAARNLRGA 80
                         5799******.**********843...4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.34E-282988No hitNo description
SMARTSM003801.5E-323093IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-213087IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.1E-293087IPR001471AP2/ERF domain
PfamPF008472.1E-113079IPR001471AP2/ERF domain
PROSITE profilePS5103221.5883087IPR001471AP2/ERF domain
PRINTSPR003671.2E-83142IPR001471AP2/ERF domain
PRINTSPR003671.2E-85369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDFSYFFSSS SEKKSSKRRQ QQQDSGNETR YLGVRRRPWG RYAAEIRDPA TKERHWLGTF  60
DTAEEAAIAY DRAARNLRGA NARTNFAYPD LPPGSSVTPY LSPDLPADQL QHYYANPLVT  120
AAAEPAPPAC GQPAHGGAGG EAYHQYHVPA EMSYGSVDAS MAYGGNNGAE MDMYFDGGAA  180
ASGGDSRAWC DASELDFGGG YNDDAAAAAA NASHGVYFEE GYVHSPLFSP MPAADEVDGF  240
QLGGSSSSYY Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-173186662ATERF1
3gcc_A1e-173186662ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11219KKSSKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG305800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278671e-122KJ727867.1 Zea mays clone pUT5959 AP2-EREBP transcription factor (EREB178) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821358.11e-130ethylene-responsive transcription factor LEP-like
TrEMBLA0A2S3GPW31e-129A0A2S3GPW3_9POAL; Uncharacterized protein
TrEMBLA0A2T7F7021e-129A0A2T7F702_9POAL; Uncharacterized protein
STRINGPavir.Ab01422.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-24ERF family protein