PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG292800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 193aa MW: 21151.5 Da PI: 10.6485 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28 | 5.2e-09 | 50 | 92 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT++E+ ++ + ++ ++ Wk+ + + + + q+ s++qky Pavir.1KG292800.1.p 50 WTEDEHRHFLAGLGKYKSN-WKAMSMEYLPSKNASQIASHYQKY 92 *****************99.****7655559************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.178 | 42 | 97 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.48E-11 | 43 | 96 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.1E-9 | 45 | 95 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 0.0014 | 46 | 95 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.02E-4 | 50 | 92 | No hit | No description |
Pfam | PF00249 | 2.4E-6 | 50 | 92 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-7 | 50 | 94 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MSTPQRRRRR LRRAQSRSRS QRGLPSAVGG GGGAPEGRQV RRKKKKALMW TEDEHRHFLA 60 GLGKYKSNWK AMSMEYLPSK NASQIASHYQ KYQNREKQRE RDECRRASIH DITEPASAAA 120 VAVALAGGDA AAAWRKDDGD LPRARAEPSA RGQESDPREP PVQSDEPPTR GDGPAGTGEE 180 FPGPDDPGTL LT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 12 | RRRRRLRR |
2 | 40 | 45 | RRKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG292800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986850.1 | 4e-50 | transcription factor SRM1 | ||||
TrEMBL | A0A3L6QFU2 | 2e-71 | A0A3L6QFU2_PANMI; Transcription factor DIVARICATA-like | ||||
STRING | Pavir.Ab01491.1.p | 1e-137 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14418 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 7e-17 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG292800.1.p |