PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG280600.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 414aa    MW: 44009.8 Da    PI: 9.2752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG280600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.2e-12319364555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Pavir.1KG280600.3.p 319 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 364
                          99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.64E-17312373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.27E-13312368No hitNo description
PROSITE profilePS5088817.282314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-16316373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9319364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-13320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MCAKIVPHEL ARPRFQYLNI LMDSHKFTWL NSSFGSPNKL NLKCQCVAGT KLSFVFFFKK  60
KLKLADPVIK PRESRAPHPS LLPPTLHFRS SFTQLRHRDH AAASISAMQP SGREMAGGEG  120
GPQQADDFFD QMLSTLPSAW ADLGAGGTKS PWELSEGAED AAVQAAFGDD SSALLVSRLR  180
QHQIGGDVKS PSSSSPVMLQ LSDLHRHGGG LAGAGAEESA GFSPLPLFTD RSAPAREEME  240
GGFRSPNSAQ GGDHSLFNGF GMHGAAAVQP QFGQGGGSVS PQSLGGPAVS GGATTPAGGA  300
APPRQVRQRA RRGQATDPHS IAERLRRERI AERMKSLQEL VPNANKTDKA SMLDEIIDYV  360
KFLQLQVKVL SMSRLGGAAG LAPLVASMSS EVLERSMPLA ADQRSVACSF DQF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323328RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG280600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620762e-60BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279382e-60KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812266.11e-167transcription factor bHLH82-like isoform X1
TrEMBLA0A2T7E2181e-166A0A2T7E218_9POAL; Uncharacterized protein
STRINGPavir.J04712.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.12e-21LJRHL1-like 2