PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG280600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 537aa    MW: 55209 Da    PI: 9.4686
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG280600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.3e-12318363555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Pavir.1KG280600.2.p 318 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 363
                          99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.28E-16311372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-12311367No hitNo description
PROSITE profilePS5088817.282313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-16315372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-9318363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-13319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MCAKIVPHEL ARPRFQYLNI LMDSHKFTWL NSSFGSPNKL NLKCQCVAGT KLSFVFFFKK  60
KLKLADPVIK PRESRAPHPS LLPPTLHFRS SFTQLRHRDH AAASISAMQP SGREMAGGEG  120
GPQQADDFFD QMLSTLPSAW ADLGAGGTKS PWELSEGAED AAVQAAFGDD SSALLVSRLR  180
QHQIGGDVKS PSSSSPVMLQ LSDLHRHGGG LAGAGAEESA GFSPLPLFTD RSAPAREEME  240
GGFRSPNSAG GDHSLFNGFG MHGAAAVQPQ FGQGGGSVSP QSLGGPAVSG GATTPAGGAA  300
PPRQVRQRAR RGQATDPHSI AERLRRERIA ERMKSLQELV PNANKTDKAS MLDEIIDYVK  360
FLQLQVKVLS MSRLGGAAGL APLVASMSSE ANSNGGGSNS GGGGAKGSAA TKANGSGGGE  420
NGGLRVAENQ VAKMMEEDMG TAMQYLQGKG LCLMPISLAS AISSATSSTS LLSRPPPVLR  480
HPAASASPAP PGQLHDGSNG FAAANAATSP ASASSAGGGG DDPRSTKDAV CGGGKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322327RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG280600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620762e-60BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279382e-60KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812267.10.0transcription factor bHLH82-like isoform X2
TrEMBLA0A3L6PF500.0A0A3L6PF50_PANMI; Transcription factor bHLH82
STRINGPavir.J04712.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.13e-33LJRHL1-like 2