PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG280600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 538aa MW: 55337.1 Da PI: 9.4686 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.3e-12 | 319 | 364 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Pavir.1KG280600.1.p 319 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 364 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.47E-12 | 312 | 368 | No hit | No description |
SuperFamily | SSF47459 | 1.3E-16 | 312 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.282 | 314 | 363 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.2E-16 | 316 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-9 | 319 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-13 | 320 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MCAKIVPHEL ARPRFQYLNI LMDSHKFTWL NSSFGSPNKL NLKCQCVAGT KLSFVFFFKK 60 KLKLADPVIK PRESRAPHPS LLPPTLHFRS SFTQLRHRDH AAASISAMQP SGREMAGGEG 120 GPQQADDFFD QMLSTLPSAW ADLGAGGTKS PWELSEGAED AAVQAAFGDD SSALLVSRLR 180 QHQIGGDVKS PSSSSPVMLQ LSDLHRHGGG LAGAGAEESA GFSPLPLFTD RSAPAREEME 240 GGFRSPNSAQ GGDHSLFNGF GMHGAAAVQP QFGQGGGSVS PQSLGGPAVS GGATTPAGGA 300 APPRQVRQRA RRGQATDPHS IAERLRRERI AERMKSLQEL VPNANKTDKA SMLDEIIDYV 360 KFLQLQVKVL SMSRLGGAAG LAPLVASMSS EANSNGGGSN SGGGGAKGSA ATKANGSGGG 420 ENGGLRVAEN QVAKMMEEDM GTAMQYLQGK GLCLMPISLA SAISSATSST SLLSRPPPVL 480 RHPAASASPA PPGQLHDGSN GFAAANAATS PASASSAGGG GDDPRSTKDA VCGGGKQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 323 | 328 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG280600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062076 | 2e-60 | BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds. | |||
GenBank | KJ727938 | 2e-60 | KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812266.1 | 0.0 | transcription factor bHLH82-like isoform X1 | ||||
TrEMBL | A0A3L6PF50 | 0.0 | A0A3L6PF50_PANMI; Transcription factor bHLH82 | ||||
STRING | Pavir.J04712.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1419 | 37 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30980.1 | 4e-33 | LJRHL1-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG280600.1.p |