PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG263500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 25986 Da PI: 7.2873 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.2 | 2.3e-06 | 39 | 71 | 4 | 37 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskK 37 + rE+ RRd++N+ f+eL l k+ +++K Pavir.1KG263500.1.p 39 QKADREKMRRDKLNEQFQELGNTLEKN-ELRDEK 71 6778****************9999885.234444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.72E-5 | 30 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-4 | 37 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDPCGRQPPE DGLIHPRDAD LSQRTECKAQ GPFSTSKVQK ADREKMRRDK LNEQFQELGN 60 TLEKNELRDE KASLKYEVDN LNNQCQQRMR VLYPWAGMEP SVVIGPPPAY PYPVPLAIPS 120 VSPSNQLNSP AAHSSSHRSN SPARDCCRSM SSPLQQASCE LRSIGVGDVA TDLELKTPGS 180 SGPSHSEITT KDSSSDSKTK KQCIKQINCT TLTEGTSSSR CSSSAPPDVS ISVRDAGVL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG263500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068946 | 4e-54 | BT068946.1 Zea mays full-length cDNA clone ZM_BFb0018C15 mRNA, complete cds. | |||
GenBank | EU975513 | 4e-54 | EU975513.1 Zea mays clone 491262 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds. | |||
GenBank | HQ858787 | 4e-54 | HQ858787.1 Zea mays clone UT1801 bHLH transcription factor mRNA, partial cds. | |||
GenBank | JQ887095 | 4e-54 | JQ887095.1 Zea mays isolate 478 clone 1 GRMZM2G114444-like gene, partial sequence. | |||
GenBank | JQ887327 | 4e-54 | JQ887327.1 Zea mays isolate 5003 clone 1 GRMZM2G114444-like gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815621.1 | 1e-111 | transcription factor bHLH121 isoform X3 | ||||
TrEMBL | A0A2S3GP78 | 1e-110 | A0A2S3GP78_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa02015.1.p | 1e-108 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11767 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.2 | 1e-13 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG263500.1.p |