PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG252700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 418aa    MW: 43667.6 Da    PI: 7.2758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG252700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.4e-11117194255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...........................TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkas........................kapskKlsKaeiLekAveYIksLq 55 
                          +++h ++Er+RR+++N+ ++ Lr+l+P  +                          ++   + a+i   +v+YIk+Lq
  Pavir.1KG252700.1.p 117 KMSHIAVERNRRKQMNEHLAVLRSLMPCFYikrgdqasiiglanllaqvitcllMMNCVQGDQASIIGGVVDYIKELQ 194
                          789*************************555*********************99888888999***********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.81E-14115143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.821115193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-13116196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.19E-10117198No hitNo description
PfamPF000104.9E-8117194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-6121199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.81E-14171217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGDGAMCELL VDDHSELRHL SGAEDLFSIL ETWEECVNGA GGGGGSSAAA MPAYSQSSTG  60
GSESAGAVEG ARPTANSRRR AGDEENGVGR GAPMRKKQKG SSTAAAQDAA ADEGAAKMSH  120
IAVERNRRKQ MNEHLAVLRS LMPCFYIKRG DQASIIGLAN LLAQVITCLL MMNCVQGDQA  180
SIIGGVVDYI KELQQVLRSL EAKKHRKAYA EQVLSPRPAV PAASPRPLLK STPPLSPRVA  240
VPISPRTPTP GSPYKPSGGG GGGAASSRPP HPATAACYMM PSPAMTPTTS SSSSSYAHDQ  300
QQQLYPTTAQ PYLPTLDSLV TELAARAAGG RPAAAGLTLP DVKVEFAGPN LVLKTVSRRA  360
PGQALKIIAA LESLSLEILH VSVSTLDDTM VHSFTIKIGI ECELSAEELV HEIQQTF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17798RRRAGDEENGVGRGAPMRKKQK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.179404e-40stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG252700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369011e-104BT036901.1 Zea mays full-length cDNA clone ZM_BFb0146M03 mRNA, complete cds.
GenBankEU9758961e-104EU975896.1 Zea mays clone 504696 DNA binding protein mRNA, complete cds.
GenBankKJ7268651e-104KJ726865.1 Zea mays clone pUT3406 bHLH transcription factor (bHLH24) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799200.10.0transcription factor SPEECHLESS-like
TrEMBLA0A3L6QHE70.0A0A3L6QHE7_PANMI; Transcription factor SPEECHLESS-like
STRINGPavir.Ab01030.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.11e-33bHLH family protein