PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG248100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 230aa MW: 24050 Da PI: 5.6477 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.9 | 5.1e-15 | 74 | 116 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ErrRR+r+N+++ Lr+++P+ +K++Ka+iL A+eYI +Lq Pavir.1KG248100.2.p 74 TERRRRRRLNDRLYALRSVVPNI-----TKMDKASILGDAIEYILQLQ 116 6*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.545 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-17 | 72 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-18 | 72 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-17 | 73 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-12 | 74 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.99E-7 | 81 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MDPAIGDSLE CLLWDCLESE ALQSLCIGAG AGGGSSQQHR DGYSSAPDAD SNSSAATAGA 60 GSIGSRPGSS IVVTERRRRR RLNDRLYALR SVVPNITKMD KASILGDAIE YILQLQQLER 120 QLLAELALLE AGAGAHHLLV GTPMPSAGAR AGTGEDDVRA GHAAVSPTKR VKRSPSLSSP 180 AASRHSPSSP PVNALQKEEM NQTEMKEMVE TAITQLDDVV GSPLSSMCY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 8e-14 | 72 | 116 | 10 | 54 | Transcription factor MYC2 |
5gnj_B | 8e-14 | 72 | 116 | 10 | 54 | Transcription factor MYC2 |
5gnj_E | 8e-14 | 72 | 116 | 10 | 54 | Transcription factor MYC2 |
5gnj_F | 8e-14 | 72 | 116 | 10 | 54 | Transcription factor MYC2 |
5gnj_G | 8e-14 | 72 | 116 | 10 | 54 | Transcription factor MYC2 |
5gnj_I | 8e-14 | 72 | 116 | 10 | 54 | Transcription factor MYC2 |
5gnj_M | 8e-14 | 72 | 116 | 10 | 54 | Transcription factor MYC2 |
5gnj_N | 8e-14 | 72 | 116 | 10 | 54 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 81 | ERRRRRRL |
2 | 75 | 80 | RRRRRR |
3 | 78 | 85 | RRRLNDRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG248100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952451.2 | 2e-50 | transcription factor bHLH35 | ||||
TrEMBL | A0A3L6RTN1 | 7e-84 | A0A3L6RTN1_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Aa02630.1.p | 9e-87 | (Panicum virgatum) | ||||
STRING | Pavir.J16319.1.p | 2e-87 | (Panicum virgatum) |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG248100.2.p |