PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG248100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 287aa MW: 29974 Da PI: 7.4728 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.4 | 7.2e-15 | 74 | 116 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ErrRR+r+N+++ Lr+++P+ +K++Ka+iL A+eYI +Lq Pavir.1KG248100.1.p 74 TERRRRRRLNDRLYALRSVVPNI-----TKMDKASILGDAIEYILQLQ 116 6*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.545 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-18 | 72 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-17 | 72 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-17 | 73 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-12 | 74 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.51E-7 | 81 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MDPAIGDSLE CLLWDCLESE ALQSLCIGAG AGGGSSQQHR DGYSSAPDAD SNSSAATAGA 60 GSIGSRPGSS IVVTERRRRR RLNDRLYALR SVVPNITKMD KASILGDAIE YILQLQQLER 120 QLLAELALLE AGAGAHHLLV GTPMPSAGAR AGTGEDDVRA GHAAVSPTKR VKRSPSLSSP 180 AASRHSPSSP PVNALQVRVS GAGDKVLVVS VACRHRRDAV AKLCRALEGL RLCVIAANVT 240 TASGTVTHTV LVQKEEMNQT EMKEMVETAI TQLDDVVGSP LSSMCY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 81 | ERRRRRRL |
2 | 75 | 80 | RRRRRR |
3 | 78 | 85 | RRRLNDRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG248100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452037.1 | 1e-97 | transcription factor bHLH35 isoform X1 | ||||
TrEMBL | A0A3L6RTN1 | 1e-122 | A0A3L6RTN1_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J16319.1.p | 1e-127 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1044 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 7e-15 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG248100.1.p |