PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG247700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 674aa    MW: 78723.5 Da    PI: 9.5648
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG247700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.51.2e-091553490
                 FAR1 34 vCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                         +C+k+ k++e ++  +k+r++++++ t+Ck +++v ++  ++we +++eleHnH+l+
  Pavir.1KG247700.1.p  1 MCNKSKKAAEPNNP-TKKRKRSVVKGTSCKMQVVVVLK-GERWEFSDVELEHNHQLV 55
                         59999999998888.99********************9.9***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-7155IPR004330FAR1 DNA binding domain
PfamPF105511.0E-33179272IPR018289MULE transposase domain
PROSITE profilePS509669.013462498IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MCNKSKKAAE PNNPTKKRKR SVVKGTSCKM QVVVVLKGER WEFSDVELEH NHQLVCSPSL  60
TKFFINHRIM SEEEKNFSRI LQEARIKPRR IMQIFRKMKG SFKYMTFGRT QLKNLKQADR  120
LKKIGNTDIQ STLNYVKKLQ KDQPGFYYSM RTDEENIVKS IFWTDSSSRL NYKLYGDFIS  180
FDTTFSTNKY NMPFAPVVGI NGHGRTVIFG YALLENQKAE TFSWVFNTLM EVMDGKRPGI  240
IITDQDAAMK KAISEIFGSE IHRNCFWHIM RNARENLGTI LKEKPEFGKE LERVIYGSIN  300
KEEFDQGWIA VLEKYNEIEN SSLKLMWNSR SMWAPAYFMH VFCPFIKTTG RSESTNASFK  360
DYVKRKDRIE TFLQQCEIFQ EEQAETERRD RFESNVQEPV FASMHLIERH AAQVYTRNIF  420
LKFQKEIHYS SAYSIEEIEN NVKYKVHRLI DHDDIEFYRK SFDIEVDKGN NTYECICKKY  480
KRDGILCCHV LRLFTQLCIN NIPEKYIKER WTKAYLEDEL KKEKLKAVED VGKSGDEAVL  540
RHAMMVNAFS EMCSKVCNDS VKSDELMRQV ETFFKKFESK EVAVSQTSEV MYKDPPIVQA  600
VSVDLGHRLF RPAEKSKEKK IQQERAAAKK KANPKKQGEN EKITKAKKSK QTKTKEVCDV  660
VPSVQDANLN ICS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11520KKRKRS
28391ARIKPRRIM
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG247700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684165.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0A9T3X60.0A0A0A9T3X6_ARUDO; Uncharacterized protein
STRINGPavir.J25851.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-85FAR1-related sequence 5