PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG240700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 432aa    MW: 47819.9 Da    PI: 8.0195
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG240700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.32.6e-11119148433
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                           k err+++NReAAr+sR+RKka++++Le+
  Pavir.1KG240700.1.p 119 AKTERRLAQNREAARKSRLRKKAYVQQLET 148
                          799*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.2E-5116193IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.22118161IPR004827Basic-leucine zipper domain
PfamPF001702.9E-8119148IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.0E-7120148No hitNo description
SuperFamilySSF579594.88E-7120162No hitNo description
PROSITE patternPS000360123138IPR004827Basic-leucine zipper domain
PfamPF141443.1E-28202276IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MYAAAGYLAA RPPTLEIFPS WPMSHLQQLY SGNSHSVGST TDSSSGQKNM PQAELVSSGS  60
IRADYEQQHE VLMVTVDDYN YEQGLGAAAT TAPIFQQHTA GQDRRKNGST RKDGKLLDAK  120
TERRLAQNRE AARKSRLRKK AYVQQLETSR IRLQQIEREL QGARSQGLFA GGGGSASGDT  180
SSGAVMFDME YARWLEDDSK LMTELQGILQ AQNLDANLGA IVEECMRHYD ELFHLRAMLA  240
RSDVFHLMTG LWVTTAERCF LWMGGFRPSE ILKMLIPQLD PLTEQQLLGM CHLQRSSLQT  300
EEALVQGLQQ LHQSLADAVG ASPLSDGASV ANYTALMALA LDRLDTLESF YRQADNLRQQ  360
TLQHMRRLLT TRQAARCFLS IGEYRRRLRA LSSVWASSRP RESFVAAAGD VSPTATGTAG  420
QAVRPYSNHS Q*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG240700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805154.10.0transcription factor TGAL5-like isoform X2
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLA0A2T7ED590.0A0A2T7ED59_9POAL; Uncharacterized protein
STRINGPavir.J08325.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38093166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-112bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]