PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG227600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 250aa    MW: 26827.4 Da    PI: 9.0288
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG227600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.6e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEde+lv +++ +G g+W++ ++  g+ R++k+c++rw +yl
  Pavir.1KG227600.1.p 14 KGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61
                         79******************************99************97 PP
2Myb_DNA-binding53.55.5e-1767111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T +Ede ++++++ lG++ W++Ia  ++ gRt++++k++w+++
  Pavir.1KG227600.1.p  67 RGNFTDDEDEVIIRLHAILGNK-WSLIAGQLP-GRTDNEIKNYWNTH 111
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.186961IPR017930Myb domain
SuperFamilySSF466894.12E-2913108IPR009057Homeodomain-like
SMARTSM007177.6E-141363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
CDDcd001672.39E-111661No hitNo description
PROSITE profilePS5129427.55862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2765116IPR009057Homeodomain-like
SMARTSM007171.0E-1566114IPR001005SANT/Myb domain
PfamPF002491.1E-1467111IPR001005SANT/Myb domain
CDDcd001678.78E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY  60
LRPDLKRGNF TDDEDEVIIR LHAILGNKWS LIAGQLPGRT DNEIKNYWNT HIKRKLLARG  120
IDPQTHRPHG SAAAAHRAAA LLHPATAVPA LASAAKPSPA ASSSDDGARS SSSTSGGASA  180
GEPRCPDLNL DLSVGPPPPP PADTPTSRPV CLCYRLGLRA GEACGCQADH PSGTQGLRYF  240
RPLEQGQFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29141167108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG227600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF3725210.0EF372521.1 Saccharum officinarum MYB protein mRNA, complete cds.
GenBankHF6794280.0HF679428.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB22 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807836.11e-135myb-related protein 308-like
SwissprotP813933e-94MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A2T7EDG51e-134A0A2T7EDG5_9POAL; Uncharacterized protein
STRINGORUFI05G18670.11e-130(Oryza rufipogon)
STRINGOS05T0429900-011e-130(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-85myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]