PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG226500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 339aa MW: 35829.9 Da PI: 7.2403 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.5 | 1.5e-08 | 198 | 240 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT++E+ ++ + ++ ++ Wk+ + + + + q+ s+++ky Pavir.1KG226500.1.p 198 WTEDEHRHFLAGLGKYKNN-WKAMSMEYLPSKNASQIASHYHKY 240 *****************99.****7655559************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.484 | 190 | 245 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.29E-9 | 191 | 244 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-4 | 194 | 243 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-8 | 198 | 242 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.92E-5 | 198 | 240 | No hit | No description |
Pfam | PF00249 | 8.8E-6 | 198 | 240 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
ASGAACGGRH PGDGVWGATP RPATGDRRRR ARDDSPAAIP PGAGNLGVVA CSGRKGVDEK 60 GAAAAASAGP EPEQEPTWSR RDDKCLELLL VTGSIVPIHL ASDIIGKTPA QMERRRRSMF 120 AELRHVLEAL DVETPPEWDM EIAATTAAAP AAGEQAPEAA APSAPPAEDS ALPSAVGGGG 180 GAPEGRQVRR KKKKALMWTE DEHRHFLAGL GKYKNNWKAM SMEYLPSKNA SQIASHYHKY 240 QNREKQRERD ECRRASIHDI TEPASARRLA LAGGDAAAAW RKDDGDLPRA RAKPSARGQE 300 SDPREPPVQS GEPPTRGDGP AGTGEEFPGP DDPGTLLT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 188 | 193 | RRKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG226500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821294.1 | 3e-90 | 11-beta-hydroxysteroid dehydrogenase 1B-like | ||||
TrEMBL | A0A3L6QFU2 | 1e-116 | A0A3L6QFU2_PANMI; Transcription factor DIVARICATA-like | ||||
STRING | Pavir.Aa02423.1.p | 1e-114 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14418 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 4e-15 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG226500.1.p |