PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG226500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 339aa    MW: 35829.9 Da    PI: 7.2403
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG226500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-08198240447
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          WT++E+  ++ +  ++ ++ Wk+ + +    + + q+ s+++ky
  Pavir.1KG226500.1.p 198 WTEDEHRHFLAGLGKYKNN-WKAMSMEYLPSKNASQIASHYHKY 240
                          *****************99.****7655559************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.484190245IPR017930Myb domain
SuperFamilySSF466893.29E-9191244IPR009057Homeodomain-like
SMARTSM007172.4E-4194243IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-8198242IPR009057Homeodomain-like
CDDcd001671.92E-5198240No hitNo description
PfamPF002498.8E-6198240IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
ASGAACGGRH PGDGVWGATP RPATGDRRRR ARDDSPAAIP PGAGNLGVVA CSGRKGVDEK  60
GAAAAASAGP EPEQEPTWSR RDDKCLELLL VTGSIVPIHL ASDIIGKTPA QMERRRRSMF  120
AELRHVLEAL DVETPPEWDM EIAATTAAAP AAGEQAPEAA APSAPPAEDS ALPSAVGGGG  180
GAPEGRQVRR KKKKALMWTE DEHRHFLAGL GKYKNNWKAM SMEYLPSKNA SQIASHYHKY  240
QNREKQRERD ECRRASIHDI TEPASARRLA LAGGDAAAAW RKDDGDLPRA RAKPSARGQE  300
SDPREPPVQS GEPPTRGDGP AGTGEEFPGP DDPGTLLT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188193RRKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG226500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821294.13e-9011-beta-hydroxysteroid dehydrogenase 1B-like
TrEMBLA0A3L6QFU21e-116A0A3L6QFU2_PANMI; Transcription factor DIVARICATA-like
STRINGPavir.Aa02423.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144181825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-15MYB family protein