PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG223500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 163aa MW: 17657.9 Da PI: 9.675 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.7e-05 | 37 | 59 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Pavir.1KG223500.1.p 37 YPCSFCKREFRSAQALGGHMNVH 59 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.44E-6 | 34 | 63 | No hit | No description |
SMART | SM00355 | 0.007 | 37 | 59 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.094 | 37 | 64 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.2E-7 | 37 | 60 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 39 | 59 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MERESNKQQQ QKQPWSYTSC GFMASSTSSF TWPPRSYPCS FCKREFRSAQ ALGGHMNVHR 60 RDRARLRHGF PPLPPPPPVA CRSSRAPAAA VIPKLNYPPP PPPPQYDHRH RPATSTSIAE 120 VSLQLGVGVV RSCSTTATPI TPGGGPEEDD GGLDLELRLG AS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-13 | 32 | 59 | 2 | 29 | superman protein |
2l1o_A | 1e-13 | 32 | 59 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG223500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804370.1 | 2e-64 | transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A3L6QJZ5 | 8e-65 | A0A3L6QJZ5_PANMI; Transcriptional regulator SUPERMAN-like | ||||
STRING | Pavir.Aa03593.1.p | 9e-97 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4667 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 6e-23 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG223500.1.p |