PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG218300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 333aa    MW: 36682.5 Da    PI: 7.5041
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG218300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.92.9e-104783541
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41
                         k+ rr+++NReAAr+sR+RKka+ie+Le+   +L + 
  Pavir.1KG218300.1.p 47 KALRRLAQNREAARKSRLRKKAYIEQLENSRLKLAQL 83
                         788*************************954444333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.5E-83889No hitNo description
SMARTSM003388.7E-843112IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.1174589IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-74789No hitNo description
PfamPF001701.9E-74785IPR004827Basic-leucine zipper domain
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
PfamPF141441.2E-31129205IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAYASPGTDT STDLDTDEKN QMLELGQLAS LAASGSGDKS KDKLGEKALR RLAQNREAAR  60
KSRLRKKAYI EQLENSRLKL AQLEQELQRA RQQGIFIPTP GDKPHSTSEN GALAFDTDYA  120
RWQEDHNKQI NELRGALNAH ASDDDLRCIV DSIMAHYCEA FRLKGVAAKA DAFHVLSGMW  180
KTPVERCFLW LGEFRPSELL KLLASRLEPL TEQQLASICN LQQSSQQAEE DLSLGVKALQ  240
QSVAETLASG SLCPAGSSGK AADSSAQMAV AIGKLGTLEN FLQEADNLRL HTLQQMQRVL  300
TTRQSARALL AISDYFSRLR ALSSLWIARP RE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG218300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807053.10.0transcription factor HBP-1b(c1)-like
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A2S3HAW90.0A0A2S3HAW9_9POAL; Uncharacterized protein
STRINGPavir.J04422.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-141TGACG motif-binding factor 6