PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG214200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 125aa MW: 13419.3 Da PI: 8.51 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.9 | 1.1e-10 | 38 | 79 | 43 | 86 |
S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ++sW v++ ++ + l+ GW++Fv n+L+ gD +vF+l+ Pavir.1KG214200.1.p 38 NQSWAVTY--CGELKCKKLGPGWRDFVVTNRLRIGDACVFELIT 79 589*****..55554456***********************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.25 | 1 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.47E-10 | 9 | 101 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-11 | 13 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-10 | 17 | 84 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.0E-7 | 37 | 79 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MQFTQLNAVA YSCAQEIPRH LHSHLPGSRV PAVLLFGNQS WAVTYCGELK CKKLGPGWRD 60 FVVTNRLRIG DACVFELITP AAGGTGSEGD GKVVFRVQVL RGDLPDEITS RGATSGSHCH 120 RGQL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG214200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811196.1 | 4e-44 | B3 domain-containing protein Os06g0112300-like isoform X1 | ||||
Swissprot | Q9LHY9 | 6e-23 | Y6112_ORYSJ; B3 domain-containing protein Os06g0112300 | ||||
TrEMBL | A0A3L6RQW6 | 3e-58 | A0A3L6RQW6_PANMI; B3 domain-containing protein | ||||
STRING | Pavir.Ab01689.1.p | 3e-76 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12046 | 19 | 33 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG214200.1.p |
Publications ? help Back to Top | |||
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