PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG199000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 628aa MW: 70493.3 Da PI: 8.1545 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.2 | 9.3e-14 | 57 | 100 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + rW++eE ell ++v+++G+++W tIa ++ R + c srw Pavir.1KG199000.1.p 57 KCRWSPEENELLTKLVNKHGTKNWQTIACALP-DRNAHACLSRWK 100 569*****************************.***********7 PP | |||||||
2 | Myb_DNA-binding | 45.3 | 2e-14 | 109 | 151 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W+++E+++l++a++ +G++ W + a++++ gRt + +k++w+ Pavir.1KG199000.1.p 109 KEAWSQQEELRLIRAHQIYGNK-WCKMAKHFP-GRTNNALKEHWR 151 579*******************.*********.***********7 PP | |||||||
3 | Myb_DNA-binding | 44.1 | 4.9e-14 | 311 | 354 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +grW +eE e+l + v+++G ++W+tIa+ ++ gR + qc+ rw Pavir.1KG199000.1.p 311 KGRWLAEENEILTKMVTKHGLKNWRTIASAIP-GRNALQCRIRWT 354 79******************************.***********5 PP | |||||||
4 | Myb_DNA-binding | 34.9 | 3.5e-11 | 364 | 405 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W+++E+++l++a++ +G+ W + ++++ gRt +k++w+ Pavir.1KG199000.1.p 364 EDWSEQEELKLIRAHQIYGSQ-WLKMVKHFP-GRTNHALKEHWR 405 67*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.269 | 52 | 101 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.03E-26 | 55 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-11 | 56 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-19 | 59 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.76E-10 | 59 | 103 | No hit | No description |
Pfam | PF13921 | 1.2E-12 | 60 | 120 | No hit | No description |
PROSITE profile | PS51294 | 21.716 | 104 | 158 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-14 | 108 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.21E-10 | 111 | 151 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 113 | 158 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.906 | 306 | 361 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.24E-24 | 309 | 404 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-12 | 310 | 359 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-20 | 312 | 364 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.34E-10 | 313 | 357 | No hit | No description |
Pfam | PF13921 | 1.1E-14 | 314 | 374 | No hit | No description |
SMART | SM00717 | 4.3E-10 | 362 | 410 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.964 | 362 | 412 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-15 | 365 | 412 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.85E-8 | 366 | 405 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 628 aa Download sequence Send to blast |
MEQSSDGMPR PRRNVSSTNH STNSDAVAEG TLNGPPCKKN LHSFNECSSS KNLERTKCRW 60 SPEENELLTK LVNKHGTKNW QTIACALPDR NAHACLSRWK YILDPAINKE AWSQQEELRL 120 IRAHQIYGNK WCKMAKHFPG RTNNALKEHW RGSMKRKLDS YLASGLLEQV PDLHENLSIP 180 QSSQSDIPKD SKVSSDRIRF SSRSKFKQNI TELSGDTSVG ESSDSIYAKA FDAHSAKVSE 240 NIIAKPQQWA TAKKKLDLVS SPVKLKSDVP PETVKHHHQE IESEKTEGPP CKKNGYCFKQ 300 GSTLKNSERT KGRWLAEENE ILTKMVTKHG LKNWRTIASA IPGRNALQCR IRWTRSLDPA 360 INKEDWSEQE ELKLIRAHQI YGSQWLKMVK HFPGRTNHAL KEHWRGCMKG KLNYYLASGM 420 LEQIPDLQEN LSVPESSHSE IPKDGQGSSE RNRPPSLPLR PKSESDLSEH DENAYISEEE 480 SSHCIYPKGL DAHSAEVYEK VIAKSMQRAR ARRKLDFLST PVELKVCTAA ASCQRPPPKM 540 EQTIPTSDNS SPPDVCQDIL QNAAAERVDV VIPTAASNPP NDIPSQATPD PCSPEIHEAN 600 ASDPLDMPYC DDLIIDSPPY LHGSSFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 60 | 413 | 6 | 110 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.21261 | 0.0 | root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG199000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791248.1 | 0.0 | transcription factor MYB3R-2-like | ||||
TrEMBL | A0A2S3GN72 | 0.0 | A0A2S3GN72_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J00515.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14263 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 2e-38 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG199000.1.p |