PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG198800.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB

Protein Properties

Length: 527aa MW: 59254.4 Da PI: 9.0578

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG198800.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.8	3.4e-15	38	82	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rW++eE l++ v+++ +++W+t+ar ++ gR+++qc++rw yl Pavir.1KG198800.3.p 38 RWSQEENGNLIQMVNLHSSKSWSTVARGIP-GRSPNQCRDRWMFYL 82 9***************************.*********9875 PP
2	Myb_DNA-binding	51.1	3.2e-16	89	129	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++W++ Ed +l++a+k +G++ W++ a+ ++ gRt+k +k++w Pavir.1KG198800.3.p 89 QPWSEHEDIKLIQAHKIHGSK-WSKLAKLFP-GRTGKAVKNHW 129 79*****************.*****.********* PP
3	Myb_DNA-binding	47	6e-15	232	276	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rW++eE + l++ v+++ +++W+t+ar ++ gR++ qc++rw yl Pavir.1KG198800.3.p 232 RWSQEENDNLIQMVNLHSSKSWSTVARGIP-GRSPIQCRDRWMFYL 276 8***************************.*********9875 PP
4	Myb_DNA-binding	46.1	1.1e-14	283	323	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++W++ Ed +l++a++ +G++ W + a+ ++ gRt+k +k++w Pavir.1KG198800.3.p 283 QPWSEHEDIKLIQAHEIHGSK-WCKLAKLFP-GRTGKAVKNHW 323 79*****************.*****.********* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.914	31	82	IPR017930	Myb domain
SMART	SM00717	2.2E-11	35	84	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-16	38	85	IPR009057	Homeodomain-like
CDD	cd00167	6.30E-11	38	82	No hit	No description
Pfam	PF13921	9.7E-15	39	99	No hit	No description
SuperFamily	SSF46689	5.14E-27	62	139	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.88	83	137	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.5E-21	86	138	IPR009057	Homeodomain-like
SMART	SM00717	5.2E-13	87	135	IPR001005	SANT/Myb domain
CDD	cd00167	1.68E-11	90	129	No hit	No description
PROSITE profile	PS51294	11.77	225	276	IPR017930	Myb domain
SMART	SM00717	6.0E-12	229	278	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.09E-26	229	323	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-17	232	281	IPR009057	Homeodomain-like
CDD	cd00167	2.34E-11	232	276	No hit	No description
Pfam	PF13921	5.6E-14	233	293	No hit	No description
PROSITE profile	PS51294	20.023	277	331	IPR017930	Myb domain
SMART	SM00717	3.7E-13	281	329	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-20	282	332	IPR009057	Homeodomain-like
CDD	cd00167	2.38E-11	284	323	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence Send to blast
MQRGELQRPY KHLKDEEHKG TADCLLHKKG NSLKRSRRWS QEENGNLIQM VNLHSSKSWS 60 TVARGIPGRS PNQCRDRWMF YLDPSVNNQP WSEHEDIKLI QAHKIHGSKW SKLAKLFPGR 120 TGKAVKNHWP SLMRKQMKSD LISGLPEQFL YMPKDQSVTK NKGCSTIQSD QDSSTNIHVS 180 SDSAVRPKSE QGLADERGEL QRPSKHLKDE EYKRTADCLP HKKGNSLKRS HRWSQEENDN 240 LIQMVNLHSS KSWSTVARGI PGRSPIQCRD RWMFYLDPAV NNQPWSEHED IKLIQAHEIH 300 GSKWCKLAKL FPGRTGKAVK NHWPSLLRKQ MKSDLVSGLP EQFPYIPKDP SVTKSKGSST 360 FQSDQDSSIN IHVSSDSAVR PKPEQGIAEN GRNESTLKGT SYDSVHGNGS VSHSVNVSEK 420 VDGQIFRSNS LSCMDQKASS ATGSFPGSLP KEESTNFLEV TPNRGLCTTY DHLSNDCFDG 480 ICSSADRESQ ELHLSSIAYL LDMPYCKSLM IVPPDSPDHG NYADGM*

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence Send to blast

MQRGELQRPY KHLKDEEHKG TADCLLHKKG NSLKRSRRWS QEENGNLIQM VNLHSSKSWS  60
TVARGIPGRS PNQCRDRWMF YLDPSVNNQP WSEHEDIKLI QAHKIHGSKW SKLAKLFPGR  120
TGKAVKNHWP SLMRKQMKSD LISGLPEQFL YMPKDQSVTK NKGCSTIQSD QDSSTNIHVS  180
SDSAVRPKSE QGLADERGEL QRPSKHLKDE EYKRTADCLP HKKGNSLKRS HRWSQEENDN  240
LIQMVNLHSS KSWSTVARGI PGRSPIQCRD RWMFYLDPAV NNQPWSEHED IKLIQAHEIH  300
GSKWCKLAKL FPGRTGKAVK NHWPSLLRKQ MKSDLVSGLP EQFPYIPKDP SVTKSKGSST  360
FQSDQDSSIN IHVSSDSAVR PKPEQGIAEN GRNESTLKGT SYDSVHGNGS VSHSVNVSEK  420
VDGQIFRSNS LSCMDQKASS ATGSFPGSLP KEESTNFLEV TPNRGLCTTY DHLSNDCFDG  480
ICSSADRESQ ELHLSSIAYL LDMPYCKSLM IVPPDSPDHG NYADGM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	4e-25	39	331	7	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	1e-24	39	331	61	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	1e-24	39	331	61	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	4e-25	39	331	7	105	C-Myb DNA-Binding Domain
1msf_C	4e-25	39	331	7	105	C-Myb DNA-Binding Domain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG198800.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828202.1	0.0	transcription factor MYB3R-4-like isoform X1
TrEMBL	A0A2T7F4E5	0.0	A0A2T7F4E5_9POAL; Uncharacterized protein
STRING	Pavir.J04773.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	1e-32	myb domain protein 3r-4

Link Out ? help Back to Top
Phytozome	Pavir.1KG198800.3.p