PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG192100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 550aa MW: 57954.3 Da PI: 8.5718 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.8 | 3.5e-12 | 366 | 409 | 4 | 52 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +h + ErrRR+r+N++fe Lr llP+ K++Ka++L k+ +Y++ Pavir.1KG192100.1.p 366 NHMISERRRRERLNESFEALRGLLPPG-----SKNDKATVLAKTLDYMN 409 78999********************95.....5**************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.79E-16 | 362 | 430 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.764 | 362 | 411 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-15 | 365 | 431 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-10 | 366 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-12 | 368 | 417 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.72E-5 | 377 | 416 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MDTLFVLGHE SRLRILQRAA VRLPGCAYLC AWAALPAAQP PASSSSAATS ARILCCLDAW 60 LCDDGASCRG DAAAGHVRAL FDAYRGSLCA AVSGCVPGWA YKDGRAFMEL PARDLAASAS 120 LPAQQQFYQL AAFMGCESGE IEVGMSTAAS GSPMSLESSL QQVFSEDFFQ QSLLEELLQL 180 PPTGPSSSSS SLPSVSVGSP AAEGSTSLLR TIAVTPAATP SSAGRHGRVH FPSPDADDAA 240 MAEAMLAVIS ASSSSALPTT PSTSTAAPPP GNHHHHHHNA RRWPRRRGTT TATAFRAYNA 300 ALAPRAPWRP PGAPGQRMIK MGISILRRMH MLRFSRERSG GTTAMAQRAQ EDEEDPPQAP 360 TSSQLNHMIS ERRRRERLNE SFEALRGLLP PGSKNDKATV LAKTLDYMNI LVAQIADLEA 420 RNRSLESRAH QHSNGGGGWK ERPYSSSERQ EVVVLQGQTG ASERVQVHVT TAAAGGAAAT 480 PSSSSSAAAG RREVIVRVEA RAAHGDVAEL VARALAVIKD MGCFTVAAVD GRRPGDGVAH 540 ATFTLRATV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 370 | 375 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG192100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005797 | 7e-36 | AP005797.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1131G07. | |||
GenBank | AP014958 | 7e-36 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 7e-36 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792423.1 | 0.0 | putative transcription factor bHLH041 isoform X2 | ||||
TrEMBL | A0A2T7F3R8 | 0.0 | A0A2T7F3R8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J40109.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3977 | 33 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 1e-13 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG192100.1.p |