PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG181400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

BES1

Protein Properties

Length: 392aa MW: 39499.8 Da PI: 9.4154

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG181400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	148.6	5.2e-46	39	134	4	98
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspes 92 r + ErEnn+rRERrRR ++++i+aGLR++Gny lp ++DnneVl+ALc eAGw+ve+DGttyr+g++p+ + g sa +sp s Pavir.1KG181400.1.p 39 VRVTSFSERENNRRRERRRRLVTSRIFAGLRNHGNYILPRHCDNNEVLRALCDEAGWIVEPDGTTYRRGCRPPpHMRGGFGGSAPVSPGS 128 5777889****************************************************************666667899****** PP DUF822 93 slqssl 98 s+ ++ Pavir.1KG181400.1.p 129 SYPVTP 134 *98544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.0E-43	40	134	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MNGGGMVGAG VGAGAGGSSG GGGDEGRGAG RSGNGSGPVR VTSFSERENN RRRERRRRLV 60 TSRIFAGLRN HGNYILPRHC DNNEVLRALC DEAGWIVEPD GTTYRRGCRP PPHMRGGFGG 120 SAPVSPGSSY PVTPTAPYGM GSGPSSYLTL GGGGGLFYGA AARGAAGSNG LADWFRRLPS 180 APDSGASSST SAPVTPQNGS PPQTMFERWA AENNAAAGGV SNLQPRRAAG LSRYAFPQQP 240 ITMPPSPVGG GAPVDPLRLL AGIQISTAAG AAAAANNNSR VRAYSPLGTP ALPSLFGAGA 300 PSFMLRAPGP VLQVSGGPWA PPVPAPAACA GGPWAAPAPA PAAWAGGGGD VEMAPREFSF 360 AWEGEAVSED YADEDALELT LGNSRTRADR A*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MNGGGMVGAG VGAGAGGSSG GGGDEGRGAG RSGNGSGPVR VTSFSERENN RRRERRRRLV  60
TSRIFAGLRN HGNYILPRHC DNNEVLRALC DEAGWIVEPD GTTYRRGCRP PPHMRGGFGG  120
SAPVSPGSSY PVTPTAPYGM GSGPSSYLTL GGGGGLFYGA AARGAAGSNG LADWFRRLPS  180
APDSGASSST SAPVTPQNGS PPQTMFERWA AENNAAAGGV SNLQPRRAAG LSRYAFPQQP  240
ITMPPSPVGG GAPVDPLRLL AGIQISTAAG AAAAANNNSR VRAYSPLGTP ALPSLFGAGA  300
PSFMLRAPGP VLQVSGGPWA PPVPAPAACA GGPWAAPAPA PAAWAGGGGD VEMAPREFSF  360
AWEGEAVSED YADEDALELT LGNSRTRADR A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	8e-20	60	112	392	444	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	8e-20	60	112	392	444	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	8e-20	60	112	392	444	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	8e-20	60	112	392	444	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG181400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819084.1	1e-140	protein BZR1 homolog 4-like
TrEMBL	A0A3L6QEY5	1e-143	A0A3L6QEY5_PANMI; Uncharacterized protein
STRING	Pavir.Ab01225.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18666	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	2e-26	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Phytozome	Pavir.1KG181400.1.p