PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG170700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 509aa    MW: 55518.8 Da    PI: 7.2237
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG170700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR421.8e-1367104139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          k+kk+CnC++skClk+YCeCf+++++C+  C+C++C N 
  Pavir.1KG170700.1.p  67 KKKKHCNCRNSKCLKMYCECFQEQQFCDG-CNCSNCGNI 104
                          589**************************.******996 PP
2TCR49.77.4e-16152191140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeC++a++ Cs++C+C dCkN e
  Pavir.1KG170700.1.p 152 KHNKGCHCKKSGCLKKYCECYQANVLCSKNCRCMDCKNFE 191
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.7E-1267107IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.07868192IPR005172CRC domain
PfamPF036384.6E-1069103IPR005172CRC domain
SMARTSM011142.0E-18152193IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.2E-12155190IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MEQGKNQQHP QQQQQPKPVV LVAAGEMKAP AVAPQQPKLA VPVVPVSRQW PMAFNPPSTE  60
AKSVTPKKKK HCNCRNSKCL KMYCECFQEQ QFCDGCNCSN CGNIVGNEKA RQEAINTIVQ  120
RNPLAFQPKI ENGPSTHNVR KDNSGAVPLV PKHNKGCHCK KSGCLKKYCE CYQANVLCSK  180
NCRCMDCKNF EGSEERKALI QGDYSSDGNH IQQAASVALN GTIGSSGYNC SPVRRKRSHE  240
DALGPRINSE GSMPETQFLQ DNHADVSLLA PSSTGFDGHN AANSQSKSYN PIYRSPLANT  300
IHLSEVNDLV TQLVTVCRMA AATTADNKVN GTTAENQFHV NGGLCNGNCK QQELKEASQM  360
DILRRGCSDQ PNINEIDSHW SDTTKDSRPA SPTTQALMCD EQETTFGNDY RCSFPSVSCD  420
QDISEINAAQ ENLVLTGLRE YLRVIITRGK INEHKSSSEA AMESDGRQHH GATPSIAPSE  480
VGENASSNCT ETPSTNQQST QNDGPERQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-286920111132Protein lin-54 homolog
5fd3_B7e-286920111132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG170700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798802.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A2T7F4C20.0A0A2T7F4C2_9POAL; Uncharacterized protein
STRINGPavir.Ab00979.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-95Tesmin/TSO1-like CXC domain-containing protein