PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG168100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 387aa    MW: 42180.3 Da    PI: 4.2764
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG168100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.61e-18111471128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyat.gkrknr.atksgyWka 85 
                          lppG+ FhP d+elv ++L + ++g++  ++   vi++    ++ Pw+L  ++  a++ e yfF+++++ + +   r+ r  ++ ++W +
  Pavir.1KG168100.1.p  11 LPPGLNFHPDDDELVEFFLLPTARGEPawFPGVIVIDDNTAGNTVPWKLLeRHGLAGDYEAYFFVRTKQDAIKeAARQDRyCASGARWVS 100
                          79*************************886666789*************733444577799***99887766427899**5555667*98 PP

                  NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkge...ktdWvmheyrl 128
                          +       +  +++  + +  L +  gr ++g    +t Wvmhey+l
  Pavir.1KG168100.1.p 101 QKPVPGASCIgGERIEWRRINLNLQMGRGRSGGssgSTGWVMHEYTL 147
                          87654444442555566666799998877766544589*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-253162IPR003441NAC domain
PROSITE profilePS5100525.17811163IPR003441NAC domain
PfamPF023658.4E-1212147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSTTAVKAIG LPPGLNFHPD DDELVEFFLL PTARGEPAWF PGVIVIDDNT AGNTVPWKLL  60
ERHGLAGDYE AYFFVRTKQD AIKEAARQDR YCASGARWVS QKPVPGASCI GGERIEWRRI  120
NLNLQMGRGR SGGSSGSTGW VMHEYTLTEP ACPSLKICHV SFSGHGKDRK RVPDEEYSEP  180
ASKRARVDAA DANSGSSTCV YGSTAPAIDQ GYGTSGDVFQ QLHAGQQEHS LPFPIDQGIS  240
ATDLQQQQPL PETNQKTDAA DSSSEICGYD DYEPVQVSDE EILDWGSSFL ADEQLMIQET  300
VADGAAESSD GISPSNQQQL QQLDSVPSWS FFLSAASAGA ELYLEQAVPT TEQHQHLPAE  360
YQTGGDEQEQ RKFWRSIGVD IENIVF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG168100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6QIZ71e-176A0A3L6QIZ7_PANMI; Uncharacterized protein
STRINGPavir.J12496.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8717946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.12e-09NAC domain containing protein 50